Mouse Gene Abca3 (ENSMUST00000133816.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Abca3 (from geneSymbol)
Gencode Transcript: ENSMUST00000133816.7
Gencode Gene: ENSMUSG00000024130.16
Transcript (Including UTRs)
   Position: mm10 chr17:24,351,950-24,397,783 Size: 45,834 Total Exon Count: 20 Strand: +


Page IndexSequence and LinksPrimersCTDOther SpeciesmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:24,351,950-24,397,783)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
EnsemblExonPrimerGeneCardsPubMedSOURCEWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK166355 - Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830048G07 product:ATP-binding cassette, sub-family A (ABC1), member 3, full insert sequence.
BC047356 - Mus musculus ATP-binding cassette, sub-family A (ABC1), member 3, mRNA (cDNA clone IMAGE:4220748).
AK089794 - Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830022D07 product:ATP-binding cassette, sub-family A (ABC1), member 3, full insert sequence.
AK165458 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F530007G02 product:ATP-binding cassette, sub-family A (ABC1), member 3, full insert sequence.
AK089316 - Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730004H09 product:ATP-binding cassette, sub-family A (ABC1), member 3, full insert sequence.
AK154698 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630103K24 product:ATP-binding cassette, sub-family A (ABC1), member 3, full insert sequence.
AY083616 - Mus musculus ATP-binding cassette transporter ABCA3 mRNA, complete cds.
BC079617 - Mus musculus ATP-binding cassette, sub-family A (ABC1), member 3, mRNA (cDNA clone MGC:90532 IMAGE:30362309), complete cds.
BC042663 - Mus musculus ATP-binding cassette, sub-family A (ABC1), member 3, mRNA (cDNA clone IMAGE:5044171), partial cds.
AF213394 - Mus musculus ATP-binding cassette protein (Abca3) mRNA, partial cds.
AK168428 - Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920015P15 product:ATP-binding cassette, sub-family A (ABC1), member 3, full insert sequence.
BC006932 - Mus musculus ATP-binding cassette, sub-family A (ABC1), member 3, mRNA (cDNA clone IMAGE:3596682), with apparent retained intron.
AK171239 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630315A08 product:ATP-binding cassette, sub-family A (ABC1), member 3, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu02010 - ABC transporters

-  Other Names for This Gene
  Alternate Gene Symbols: AK166355, uc008avm.1, uc008avm.2, uc008avm.3
UCSC ID: uc008avm.3
RefSeq Accession: NM_001039581

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.