Mouse Gene Rab11fip3 (ENSMUST00000118828.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus RAB11 family interacting protein 3 (class II) (Rab11fip3), transcript variant 3, mRNA. (from RefSeq NM_153140)
Gencode Transcript: ENSMUST00000118828.7
Gencode Gene: ENSMUSG00000037098.18
Transcript (Including UTRs)
   Position: mm10 chr17:25,989,036-26,021,860 Size: 32,825 Total Exon Count: 12 Strand: -
Coding Region
   Position: mm10 chr17:25,990,772-26,016,128 Size: 25,357 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:25,989,036-26,021,860)mRNA (may differ from genome)Protein (444 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: RFIP3_MOUSE
DESCRIPTION: RecName: Full=Rab11 family-interacting protein 3; Short=FIP3-Rab11; Short=Rab11-FIP3;
FUNCTION: Acts as a regulator of endocytic traffic by participating in membrane delivery. Required for the abcission step in cytokinesis, possibly by acting as an 'address tag' delivering recycling endosome membranes to the cleavage furrow during late cytokinesis. Also required for the structural integrity of the endosomal recycling compartment during interphase.
SUBUNIT: Homodimer. Forms a complex with Rab11 (RAB11A or RAB11B) and ARF6. Interacts with RAB11A; the interaction is direct. Interacts with RAB11B, RAB25 and RAB11FIP4. Interacts with ARF6. Interacts with RACGAP1/MgcRacGAP; interaction takes place during late stage of cytokinesis and is required for recruitment to the midbody. Interacts with EXOC7 (By similarity). Interacts with ASAP1.
SUBCELLULAR LOCATION: Recycling endosome membrane; Peripheral membrane protein (By similarity). Cytoplasm, cytoskeleton, centrosome (By similarity). Cleavage furrow (By similarity). Midbody (By similarity). Note=In early mitosis remains diffuse and distributed through the cell. The onset of anaphase sequesters these vesicles to the centrosomes at the opposite poles of the cell. During telophase these vesicles move from the centrosomes, to the furrow, and then to the midbody to aid in abscission. Interaction with Rab11 mediates localization to endosomes. Interaction with ARF6 mediates localization to the midbody (By similarity).
DOMAIN: The RBD-FIP domain mediates the interaction with Rab11 (RAB11A or RAB11B) (By similarity).
SIMILARITY: Contains 2 EF-hand domains.
SIMILARITY: Contains 1 FIP-RBD domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -60.40200-0.302 Picture PostScript Text
3' UTR -621.001736-0.358 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011992 - EF-hand-like_dom
IPR018249 - EF_HAND_2
IPR002048 - EF_hand_Ca-bd
IPR019018 - Rab-bd_FIP-RBD

Pfam Domains:
PF09457 - FIP domain

SCOP Domains:
140591 - Type III secretion system domain
63411 - LuxS/MPP-like metallohydrolase
57959 - Leucine zipper domain
144270 - Eferin C-derminal domain-like

ModBase Predicted Comparative 3D Structure on Q8CHD8
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
      
      
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0017137 Rab GTPase binding
GO:0030306 ADP-ribosylation factor binding
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
GO:0051959 dynein light intermediate chain binding

Biological Process:
GO:0000910 cytokinesis
GO:0007049 cell cycle
GO:0016192 vesicle-mediated transport
GO:0032456 endocytic recycling
GO:0032465 regulation of cytokinesis
GO:0051301 cell division
GO:0061512 protein localization to cilium
GO:0070164 negative regulation of adiponectin secretion

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005856 cytoskeleton
GO:0016020 membrane
GO:0030496 midbody
GO:0032154 cleavage furrow
GO:0043231 intracellular membrane-bounded organelle
GO:0045171 intercellular bridge
GO:0055037 recycling endosome
GO:0055038 recycling endosome membrane


-  Descriptions from all associated GenBank mRNAs
  LF200967 - JP 2014500723-A/8470: Polycomb-Associated Non-Coding RNAs.
BC023364 - Mus musculus RAB11 family interacting protein 3 (class II), mRNA (cDNA clone IMAGE:5043679), complete cds.
AK128985 - Mus musculus cDNA fis, clone TRACH3019977.
AB093257 - Mus musculus mRNA for mKIAA0665 protein.
AK083658 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030060O14 product:similar to EFERIN [Homo sapiens], full insert sequence.
LF250886 - JP 2014500723-A/58389: Polycomb-Associated Non-Coding RNAs.
AK085516 - Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630036H09 product:hypothetical protein, full insert sequence.
LF250887 - JP 2014500723-A/58390: Polycomb-Associated Non-Coding RNAs.
LF250888 - JP 2014500723-A/58391: Polycomb-Associated Non-Coding RNAs.
LF250889 - JP 2014500723-A/58392: Polycomb-Associated Non-Coding RNAs.
LF250890 - JP 2014500723-A/58393: Polycomb-Associated Non-Coding RNAs.
AK052775 - Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630049C11 product:weakly similar to EFERIN [Homo sapiens], full insert sequence.
MA436544 - JP 2018138019-A/8470: Polycomb-Associated Non-Coding RNAs.
MA486463 - JP 2018138019-A/58389: Polycomb-Associated Non-Coding RNAs.
MA486464 - JP 2018138019-A/58390: Polycomb-Associated Non-Coding RNAs.
MA486465 - JP 2018138019-A/58391: Polycomb-Associated Non-Coding RNAs.
MA486466 - JP 2018138019-A/58392: Polycomb-Associated Non-Coding RNAs.
MA486467 - JP 2018138019-A/58393: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04144 - Endocytosis

Reactome (by CSHL, EBI, and GO)

Protein Q8CHD8 (Reactome details) participates in the following event(s):

R-MMU-5620921 ASAP1 recruits RAB11FIP3 and RAB11 to the ciliary targeting complex
R-MMU-5623513 ASAP1 stimulates GTPase activity of ARF4
R-MMU-5623519 RAB3IP and RAB8A bind to the ciliary targeting complex
R-MMU-5623521 RAB3IP stimulates nucleotide exchange on RAB8A
R-MMU-5623524 The exocyst complex binds to RAB3IP in the ciliary targeting complex
R-MMU-5620916 VxPx cargo-targeting to cilium
R-MMU-5620920 Cargo trafficking to the periciliary membrane
R-MMU-5617833 Cilium Assembly
R-MMU-1852241 Organelle biogenesis and maintenance

-  Other Names for This Gene
  Alternate Gene Symbols: Kiaa0665, NM_153140, Q8CHD8, Q8JZT3, RFIP3_MOUSE, uc008bdc.1, uc008bdc.2
UCSC ID: uc008bdc.2
RefSeq Accession: NM_153140
Protein: Q8CHD8 (aka RFIP3_MOUSE)
CCDS: CCDS50039.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.