Mouse Gene Slc22a7 (ENSMUST00000087012.6) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus solute carrier family 22 (organic anion transporter), member 7 (Slc22a7), mRNA. (from RefSeq NM_144856)
Gencode Transcript: ENSMUST00000087012.6
Gencode Gene: ENSMUSG00000067144.7
Transcript (Including UTRs)
   Position: mm10 chr17:46,432,183-46,438,457 Size: 6,275 Total Exon Count: 10 Strand: -
Coding Region
   Position: mm10 chr17:46,432,481-46,438,389 Size: 5,909 Coding Exon Count: 10 

Page IndexSequence and LinksPrimersCTDRNA StructureOther Species
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:46,432,183-46,438,457)mRNA (may differ from genome)Protein (540 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsPubMed
SOURCEUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.5068-0.184 Picture PostScript Text
3' UTR -109.00298-0.366 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  BC026597 - Mus musculus solute carrier family 22 (organic anion transporter), member 7, mRNA (cDNA clone MGC:37316 IMAGE:4975360), complete cds.
AK143949 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F530004K04 product:solute carrier family 22 (organic anion transporter), member 7, full insert sequence.
BC025813 - Mus musculus solute carrier family 22 (organic anion transporter), member 7, mRNA (cDNA clone MGC:37791 IMAGE:5097639), complete cds.
AK082865 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330046A19 product:LIVER-SPECIFIC TRANSPORT PROTEIN homolog [Rattus norvegicus], full insert sequence.
BC026598 - Mus musculus solute carrier family 22 (organic anion transporter), member 7, mRNA (cDNA clone MGC:37327 IMAGE:4975598), complete cds.
BC013474 - Mus musculus solute carrier family 22 (organic anion transporter), member 7, mRNA (cDNA clone MGC:18877 IMAGE:4236556), complete cds.
BC024119 - Mus musculus solute carrier family 22 (organic anion transporter), member 7, mRNA (cDNA clone MGC:37764 IMAGE:5096875), complete cds.
AB069965 - Mus musculus SLC22A7 mRNA for organic anion transporter 2, complete cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04976 - Bile secretion

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0R4J122, NM_144856, uc008csw.1, uc008csw.2, uc008csw.3
UCSC ID: uc008csw.3
RefSeq Accession: NM_144856
CCDS: CCDS28829.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.