Mouse Gene Abcg8 (ENSMUST00000045714.14) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus ATP binding cassette subfamily G member 8 (Abcg8), transcript variant 3, non-coding RNA. (from RefSeq NR_104382)
Gencode Transcript: ENSMUST00000045714.14
Gencode Gene: ENSMUSG00000024254.15
Transcript (Including UTRs)
   Position: mm10 chr17:84,683,121-84,700,333 Size: 17,213 Total Exon Count: 13 Strand: +
Coding Region
   Position: mm10 chr17:84,683,232-84,698,799 Size: 15,568 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:84,683,121-84,700,333)mRNA (may differ from genome)Protein (673 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: ABCG8_MOUSE
DESCRIPTION: RecName: Full=ATP-binding cassette sub-family G member 8; AltName: Full=Sterolin-2;
FUNCTION: Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile.
SUBUNIT: May form heterodimers with ABCG5 or be tightly coupled to ABCG5 along a pathway regulating diatery-sterol absorption and excretion (By similarity).
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (Probable).
TISSUE SPECIFICITY: Expressed in the intestine and, at lower level, in the liver.
INDUCTION: Up-regulated by cholesterol feeding. Possibly mediated by the liver X receptor/retinoid X receptor (LXR/RXR) pathway. Endotoxin (LPS) significantly decreased mRNA levels in the liver but not in the small intestine.
SIMILARITY: Belongs to the ABC transporter superfamily. ABCG family. Eye pigment precursor importer (TC 3.A.1.204) subfamily.
SIMILARITY: Contains 1 ABC transmembrane type-2 domain.
SIMILARITY: Contains 1 ABC transporter domain.
CAUTION: Seems to have a defective ATP-binding region.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -28.80111-0.259 Picture PostScript Text
3' UTR -524.901534-0.342 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013525 - ABC_2_trans
IPR003439 - ABC_transporter-like
IPR017871 - ABC_transporter_CS

Pfam Domains:
PF00005 - ABC transporter
PF01061 - ABC-2 type transporter

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases
53795 - PEP carboxykinase-like

ModBase Predicted Comparative 3D Structure on Q9DBM0
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0015248 sterol transporter activity
GO:0016887 ATPase activity
GO:0042626 ATPase activity, coupled to transmembrane movement of substances
GO:0046872 metal ion binding
GO:0046982 protein heterodimerization activity
GO:0017127 cholesterol transporter activity

Biological Process:
GO:0006869 lipid transport
GO:0007584 response to nutrient
GO:0007588 excretion
GO:0010949 negative regulation of intestinal phytosterol absorption
GO:0015914 phospholipid transport
GO:0015918 sterol transport
GO:0030299 intestinal cholesterol absorption
GO:0033344 cholesterol efflux
GO:0042493 response to drug
GO:0042632 cholesterol homeostasis
GO:0045796 negative regulation of intestinal cholesterol absorption
GO:0055085 transmembrane transport
GO:0055092 sterol homeostasis

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016324 apical plasma membrane
GO:0043190 ATP-binding cassette (ABC) transporter complex
GO:0043235 receptor complex


-  Descriptions from all associated GenBank mRNAs
  AK050938 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030040P06 product:ATP-BINDING CASSETTE, SUB-FAMILY G, MEMBER 8 (STEROLIN-2) homolog [Mus musculus], full insert sequence.
AY196215 - Mus musculus strain I/LnJ ATP-binding cassette sub-family G member 8 (Abcg8) mRNA, complete cds.
AY196216 - Mus musculus strain PERA/Ei ATP-binding cassette sub-family G member 8 (Abcg8) mRNA, complete cds.
AF324495 - Mus musculus sterolin-2 (Abcg8) mRNA, complete cds.
BC138484 - Mus musculus ATP-binding cassette, sub-family G (WHITE), member 8, mRNA (cDNA clone MGC:170109 IMAGE:8861504), complete cds.
BC145293 - Mus musculus ATP-binding cassette, sub-family G (WHITE), member 8, mRNA (cDNA clone MGC:178855 IMAGE:9053847), complete cds.
AK004871 - Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300003C16 product:ATP-binding cassette, sub-family G (WHITE), member 8, full insert sequence.
AK008188 - Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010011G12 product:ATP-binding cassette, sub-family G (WHITE), member 8, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu02010 - ABC transporters
mmu04975 - Fat digestion and absorption
mmu04976 - Bile secretion

Reactome (by CSHL, EBI, and GO)

Protein Q9DBM0 (Reactome details) participates in the following event(s):

R-MMU-265783 ABCG5:ABCG8 transports sterols from cytosol to extracellular region
R-MMU-1369062 ABC transporters in lipid homeostasis
R-MMU-382556 ABC-family proteins mediated transport
R-MMU-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: ABCG8_MOUSE, NR_104382, Q9DBM0, uc008dta.1, uc008dta.2
UCSC ID: uc008dta.2
RefSeq Accession: NM_026180
Protein: Q9DBM0 (aka ABCG8_MOUSE or ABG8_MOUSE)
CCDS: CCDS29002.1, CCDS84337.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.