Mouse Gene Cndp1 (ENSMUST00000070139.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus carnosine dipeptidase 1 (metallopeptidase M20 family) (Cndp1), mRNA. (from RefSeq NM_177450)
Gencode Transcript: ENSMUST00000070139.8
Gencode Gene: ENSMUSG00000056162.14
Transcript (Including UTRs)
   Position: mm10 chr18:84,610,509-84,650,095 Size: 39,587 Total Exon Count: 12 Strand: -
Coding Region
   Position: mm10 chr18:84,611,588-84,640,278 Size: 28,691 Coding Exon Count: 11 

Page IndexSequence and LinksPrimersCTDRNA StructureOther Species
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:84,610,509-84,650,095)mRNA (may differ from genome)Protein (492 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsPubMed
SOURCEUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -61.40271-0.227 Picture PostScript Text
3' UTR -247.901079-0.230 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
      
      
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  BC043305 - Mus musculus carnosine dipeptidase 1 (metallopeptidase M20 family), mRNA (cDNA clone MGC:49227 IMAGE:5040944), complete cds.
AK085308 - Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630009N02 product:similar to GLUTAMATE CARBOXYPEPTIDASE-LIKE PROTEIN 2 [Homo sapiens], full insert sequence.
AK162089 - Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420406L11 product:carnosine dipeptidase 1 (metallopeptidase M20 family), full insert sequence.
AK165706 - Mus musculus adult male intestinal mucosa cDNA, RIKEN full-length enriched library, clone:G630007G19 product:carnosine dipeptidase 1 (metallopeptidase M20 family), full insert sequence.
AK165500 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F530205H05 product:carnosine dipeptidase 1 (metallopeptidase M20 family), full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00340 - Histidine metabolism
mmu00410 - beta-Alanine metabolism
mmu01100 - Metabolic pathways

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0R4J0V0, NM_177450, uc008fur.1, uc008fur.2, uc008fur.3, uc008fur.4
UCSC ID: uc008fur.4
RefSeq Accession: NM_177450
CCDS: CCDS29382.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.