The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on Q9CQ40
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
LF201591 - JP 2014500723-A/9094: Polycomb-Associated Non-Coding RNAs. LF205076 - JP 2014500723-A/12579: Polycomb-Associated Non-Coding RNAs. AK150572 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830012D15 product:mitochondrial ribosomal protein L49, full insert sequence. AK150715 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830013P06 product:mitochondrial ribosomal protein L49, full insert sequence. AK014723 - Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833419D18 product:mitochondrial ribosomal protein L49, full insert sequence. AK180468 - Mus musculus cDNA, clone:Y0G0114G13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000056166, based on BLAT search. BC028956 - Mus musculus mitochondrial ribosomal protein L49, mRNA (cDNA clone MGC:35661 IMAGE:5368499), complete cds. AK049794 - Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530050F05 product:mitochondrial ribosomal protein L49, full insert sequence. AK077397 - Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched library, clone:5430428O05 product:mitochondrial ribosomal protein L49, full insert sequence. AK011273 - Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610002C10 product:mitochondrial ribosomal protein L49, full insert sequence. LF256541 - JP 2014500723-A/64044: Polycomb-Associated Non-Coding RNAs. LF256542 - JP 2014500723-A/64045: Polycomb-Associated Non-Coding RNAs. LF256543 - JP 2014500723-A/64046: Polycomb-Associated Non-Coding RNAs. AK027949 - Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110031O23 product:mitochondrial ribosomal protein L49, full insert sequence. AK007712 - Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810037A06 product:mitochondrial ribosomal protein L49, full insert sequence. AK003040 - Mus musculus adult male brain cDNA, RIKEN full-length enriched library, clone:0710008G23 product:mitochondrial ribosomal protein L49, full insert sequence. AK217865 - Mus musculus cDNA, clone:Y2G0143E14, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000007482, based on BLAT search. AK210880 - Mus musculus cDNA, clone:Y2G0119P06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000007482, based on BLAT search. MA437168 - JP 2018138019-A/9094: Polycomb-Associated Non-Coding RNAs. MA440653 - JP 2018138019-A/12579: Polycomb-Associated Non-Coding RNAs. MA492118 - JP 2018138019-A/64044: Polycomb-Associated Non-Coding RNAs. MA492119 - JP 2018138019-A/64045: Polycomb-Associated Non-Coding RNAs. MA492120 - JP 2018138019-A/64046: Polycomb-Associated Non-Coding RNAs.
Biochemical and Signaling Pathways
Reactome (by CSHL, EBI, and GO)
Protein Q9CQ40 (Reactome details) participates in the following event(s):
R-MMU-5419273 Hydrolysis of GTP and dissociation of 28S and 39S subunits R-MMU-5419261 55S ribosome with peptidyl-tRNA in A site binds GFM1:GTP R-MMU-5419264 MTRF1L (MTRF1a) or ICT1 binds stop codon in 55S ribosome:mRNA:peptidyl-tRNA R-MMU-5419281 MRRF binds 55S ribosome:mRNA:tRNA R-MMU-5419276 Mitochondrial translation termination R-MMU-5368287 Mitochondrial translation R-MMU-5389840 Mitochondrial translation elongation R-MMU-72766 Translation R-MMU-392499 Metabolism of proteins
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