Mouse Gene Slc22a8 (ENSMUST00000010251.10) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus solute carrier family 22 (organic anion transporter), member 8 (Slc22a8), transcript variant 1, mRNA. (from RefSeq NM_031194)
Gencode Transcript: ENSMUST00000010251.10
Gencode Gene: ENSMUSG00000063796.9
Transcript (Including UTRs)
   Position: mm10 chr19:8,591,289-8,611,835 Size: 20,547 Total Exon Count: 12 Strand: +
Coding Region
   Position: mm10 chr19:8,593,907-8,610,277 Size: 16,371 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:8,591,289-8,611,835)mRNA (may differ from genome)Protein (537 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: S22A8_MOUSE
DESCRIPTION: RecName: Full=Solute carrier family 22 member 8; AltName: Full=Organic anion transporter 3; Short=mOat3; AltName: Full=Reduced in osteosclerosis transporter;
FUNCTION: Plays an important role in the excretion/detoxification of endogenous and exogenous organic anions, especially from the brain and kidney. Mediates the uptake of p-amino-hippurate (PAH) and estron sulfate (ES). Also mediates uptake of several organic compounds such as prostaglandin E(2), prostaglandin F(2-alpha), allopurinol, 6-mercaptopurine (6-MP), 5-fluorouracil (5-FU), and L-carnitine.
SUBCELLULAR LOCATION: Basolateral cell membrane; Multi-pass membrane protein (Potential). Note=Localizes on the brush border membrane of the choroid epithelial cells. Localizes to the basolateral membrane of the proximal tubular cells. Localizes on the abluminal and possibly, luminal membrane of the brain capillary endothelial cells (BCEC) (By similarity).
TISSUE SPECIFICITY: Highly expressed in kidney. Expressed in developing bone. Weakly expressed in brain and eye.
DISRUPTION PHENOTYPE: Mice appear healthly and are fertile. Exhibit a loss of taurocholate, estrone sulfate and para- aminohippurate transport in kidney and of fluorescein (FL) transport in choroid plexus.
SIMILARITY: Belongs to the major facilitator (TC 2.A.1) superfamily. Organic cation transporter (TC 2.A.1.19) family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -87.70272-0.322 Picture PostScript Text
3' UTR -440.601558-0.283 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020846 - MFS_dom
IPR016196 - MFS_dom_general_subst_transpt
IPR004749 - Orgcat_transp
IPR005828 - Sub_transporter

Pfam Domains:
PF00083 - Sugar (and other) transporter
PF07690 - Major Facilitator Superfamily

SCOP Domains:
103473 - MFS general substrate transporter

ModBase Predicted Comparative 3D Structure on O88909
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
      
      
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005080 protein kinase C binding
GO:0005452 inorganic anion exchanger activity
GO:0008514 organic anion transmembrane transporter activity
GO:0015347 sodium-independent organic anion transmembrane transporter activity
GO:0015651 quaternary ammonium group transmembrane transporter activity
GO:0022857 transmembrane transporter activity

Biological Process:
GO:0006811 ion transport
GO:0009636 response to toxic substance
GO:0015697 quaternary ammonium group transport
GO:0015698 inorganic anion transport
GO:0034635 glutathione transport
GO:0043252 sodium-independent organic anion transport
GO:0055085 transmembrane transport

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016323 basolateral plasma membrane


-  Descriptions from all associated GenBank mRNAs
  AK031962 - Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330513A04 product:reduced in osteosclerosis transporter, full insert sequence.
AK157891 - Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930004N22 product:solute carrier family 22 (organic anion transporter), member 8, full insert sequence.
BC014762 - Mus musculus solute carrier family 22 (organic anion transporter), member 8, mRNA (cDNA clone MGC:25962 IMAGE:4239544), complete cds.
AK044336 - Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930007P06 product:reduced in osteosclerosis transporter, full insert sequence.
AF078869 - Mus musculus reduced in osteosclerosis transporter (Roct) mRNA, complete cds.
AB079895 - Mus musculus mRNA for organic anion transporter 3, partial cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04976 - Bile secretion

Reactome (by CSHL, EBI, and GO)

Protein O88909 (Reactome details) participates in the following event(s):

R-MMU-561041 OAT1-3 transport organic anions with antiport of dicarboxylic acids
R-MMU-561048 Organic anion transport
R-MMU-549132 Organic cation/anion/zwitterion transport
R-MMU-425366 Transport of bile salts and organic acids, metal ions and amine compounds
R-MMU-425407 SLC-mediated transmembrane transport
R-MMU-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: NM_031194, O88909, Oat3, Q3TZF9, Q8CCX3, Q8CFH5, Q91WJ9, Roct, S22A8_MOUSE, uc008gmc.1, uc008gmc.2, uc008gmc.3, uc008gmc.4
UCSC ID: uc008gmc.4
RefSeq Accession: NM_031194
Protein: O88909 (aka S22A8_MOUSE)
CCDS: CCDS29537.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.