Mouse Gene Sufu (ENSMUST00000120778.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Sufu (from geneSymbol)
Gencode Transcript: ENSMUST00000120778.7
Gencode Gene: ENSMUSG00000025231.17
Transcript (Including UTRs)
   Position: mm10 chr19:46,397,004-46,455,707 Size: 58,704 Total Exon Count: 7 Strand: +
Coding Region
   Position: mm10 chr19:46,397,103-46,454,850 Size: 57,748 Coding Exon Count: 7 

Page IndexSequence and LinksPrimersCTDRNA StructureOther Species
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:46,397,004-46,455,707)mRNA (may differ from genome)Protein (297 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsPubMedSOURCE
UniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -34.0099-0.343 Picture PostScript Text
3' UTR -337.50857-0.394 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AJ131692 - Mus musculus mRNA for Su(fu) protein (Suppressor of fused gene), partial.
AK016976 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933429A17 product:suppressor of fused homolog (Drosophila), full insert sequence.
BC048168 - Mus musculus suppressor of fused homolog (Drosophila), mRNA (cDNA clone MGC:61295 IMAGE:6821477), complete cds.
BC056997 - Mus musculus suppressor of fused homolog (Drosophila), mRNA (cDNA clone MGC:66978 IMAGE:6821477), complete cds.
AK156410 - Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830020M15 product:suppressor of fused homolog (Drosophila), full insert sequence.
AF134893 - Mus musculus suppressor of fused (Sufu) mRNA, complete cds.
AJ308626 - Mus musculus mRNA for suppressor of fused homolog (Drosophila) (Sufu gene), clone IMAGE:1195307.
AK015885 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930524I10 product:suppressor of fused homolog (Drosophila), full insert sequence.
AK047603 - Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930097H22 product:suppressor of fused homolog (Drosophila), full insert sequence.
AJ308625 - Mus musculus partial mRNA for suppressor of fused homolog (Drosophila) (Sufu gene), clone IMAGE:513730.
AK208852 - Mus musculus cDNA, clone:Y2G0112P15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000026261, based on BLAT search.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04340 - Hedgehog signaling pathway
mmu05200 - Pathways in cancer
mmu05217 - Basal cell carcinoma

BioCarta from NCI Cancer Genome Anatomy Project
m_shhPathway - Sonic Hedgehog (Shh) Pathway

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0R4J1M0, AK015885, uc008htn.1, uc008htn.2, uc008htn.3
UCSC ID: uc008htn.3
RefSeq Accession: NM_015752

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.