Mouse Gene Lrrc8a (ENSMUST00000095078.2) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus leucine rich repeat containing 8A VRAC subunit A (Lrrc8a), mRNA. (from RefSeq NM_177725)
Gencode Transcript: ENSMUST00000095078.2
Gencode Gene: ENSMUSG00000007476.18
Transcript (Including UTRs)
   Position: mm10 chr2:30,237,722-30,263,790 Size: 26,069 Total Exon Count: 4 Strand: +
Coding Region
   Position: mm10 chr2:30,255,176-30,262,123 Size: 6,948 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:30,237,722-30,263,790)mRNA (may differ from genome)Protein (810 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: LRC8A_MOUSE
DESCRIPTION: RecName: Full=Leucine-rich repeat-containing protein 8A;
FUNCTION: Involved in B-cell development. Required for the pro-B cell to pre-B cell transition.
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (Potential).
TISSUE SPECIFICITY: High levels detected in the bone marrow; lower levels found in peripheral blood cells.
SIMILARITY: Contains 17 LRR (leucine-rich) repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -76.00201-0.378 Picture PostScript Text
3' UTR -562.301667-0.337 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001611 - Leu-rich_rpt
IPR025875 - Leu-rich_rpt_2_copies
IPR003591 - Leu-rich_rpt_typical-subtyp
IPR021040 - LRR_protein-8_N

Pfam Domains:
PF00560 - Leucine Rich Repeat
PF12534 - Pannexin-like TM region of LRRC8
PF13306 - Leucine rich repeats (6 copies)
PF13516 - Leucine Rich repeat
PF13855 - Leucine rich repeat

SCOP Domains:
52047 - RNI-like
52058 - L domain-like
52075 - Outer arm dynein light chain 1

ModBase Predicted Comparative 3D Structure on Q80WG5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005225 volume-sensitive anion channel activity
GO:0042802 identical protein binding
GO:0005253 anion channel activity

Biological Process:
GO:0002329 pre-B cell differentiation
GO:0006811 ion transport
GO:0006820 anion transport
GO:0006884 cell volume homeostasis
GO:0006970 response to osmotic stress
GO:0007165 signal transduction
GO:0015698 inorganic anion transport
GO:0030154 cell differentiation
GO:0098656 anion transmembrane transport

Cellular Component:
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0034702 ion channel complex


-  Descriptions from all associated GenBank mRNAs
  LF193234 - JP 2014500723-A/737: Polycomb-Associated Non-Coding RNAs.
BC048152 - Mus musculus leucine rich repeat containing 8A, mRNA (cDNA clone IMAGE:5708850).
MA428811 - JP 2018138019-A/737: Polycomb-Associated Non-Coding RNAs.
LF259550 - JP 2014500723-A/67053: Polycomb-Associated Non-Coding RNAs.
LF259552 - JP 2014500723-A/67055: Polycomb-Associated Non-Coding RNAs.
LF259554 - JP 2014500723-A/67057: Polycomb-Associated Non-Coding RNAs.
LF259558 - JP 2014500723-A/67061: Polycomb-Associated Non-Coding RNAs.
BC042710 - Mus musculus leucine rich repeat containing 8A, mRNA (cDNA clone IMAGE:5290106).
LF259561 - JP 2014500723-A/67064: Polycomb-Associated Non-Coding RNAs.
LF259562 - JP 2014500723-A/67065: Polycomb-Associated Non-Coding RNAs.
LF259563 - JP 2014500723-A/67066: Polycomb-Associated Non-Coding RNAs.
LF259564 - JP 2014500723-A/67067: Polycomb-Associated Non-Coding RNAs.
LF259565 - JP 2014500723-A/67068: Polycomb-Associated Non-Coding RNAs.
AK078148 - Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330578B10 product:unclassifiable, full insert sequence.
LF259566 - JP 2014500723-A/67069: Polycomb-Associated Non-Coding RNAs.
LF259568 - JP 2014500723-A/67071: Polycomb-Associated Non-Coding RNAs.
LF259570 - JP 2014500723-A/67073: Polycomb-Associated Non-Coding RNAs.
LF259571 - JP 2014500723-A/67074: Polycomb-Associated Non-Coding RNAs.
LF259572 - JP 2014500723-A/67075: Polycomb-Associated Non-Coding RNAs.
LF259573 - JP 2014500723-A/67076: Polycomb-Associated Non-Coding RNAs.
MA495127 - JP 2018138019-A/67053: Polycomb-Associated Non-Coding RNAs.
MA495129 - JP 2018138019-A/67055: Polycomb-Associated Non-Coding RNAs.
MA495131 - JP 2018138019-A/67057: Polycomb-Associated Non-Coding RNAs.
MA495135 - JP 2018138019-A/67061: Polycomb-Associated Non-Coding RNAs.
MA495138 - JP 2018138019-A/67064: Polycomb-Associated Non-Coding RNAs.
MA495139 - JP 2018138019-A/67065: Polycomb-Associated Non-Coding RNAs.
MA495140 - JP 2018138019-A/67066: Polycomb-Associated Non-Coding RNAs.
MA495141 - JP 2018138019-A/67067: Polycomb-Associated Non-Coding RNAs.
MA495142 - JP 2018138019-A/67068: Polycomb-Associated Non-Coding RNAs.
MA495143 - JP 2018138019-A/67069: Polycomb-Associated Non-Coding RNAs.
MA495145 - JP 2018138019-A/67071: Polycomb-Associated Non-Coding RNAs.
MA495147 - JP 2018138019-A/67073: Polycomb-Associated Non-Coding RNAs.
MA495148 - JP 2018138019-A/67074: Polycomb-Associated Non-Coding RNAs.
MA495149 - JP 2018138019-A/67075: Polycomb-Associated Non-Coding RNAs.
MA495150 - JP 2018138019-A/67076: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q80WG5 (Reactome details) participates in the following event(s):

R-MMU-8941543 VRAC heteromer transports I-, Cl- from cytosol to extracellular region
R-MMU-5223345 Miscellaneous transport and binding events
R-MMU-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: A2AQZ0, LRC8A_MOUSE, Lrrc8, NM_177725, Q80WG5, uc008jbu.1, uc008jbu.2, uc008jbu.3
UCSC ID: uc008jbu.3
RefSeq Accession: NM_177725
Protein: Q80WG5 (aka LRC8A_MOUSE)
CCDS: CCDS15875.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.