Mouse Gene Dnm1 (ENSMUST00000091089.11) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus dynamin 1 (Dnm1), transcript variant 1, mRNA. (from RefSeq NM_010065)
RefSeq Summary (NM_010065): This gene encodes a member of the dynamin subfamily of GTP-binding proteins. The encoded protein is a GTPase which is required for membrane recycling, including vesicle endocytosis in neurons. It may also be involved in cellular fission via association with microtubules and actin filaments. Mutations in this gene have been shown to cause seizures. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2014].
Gencode Transcript: ENSMUST00000091089.11
Gencode Gene: ENSMUSG00000026825.17
Transcript (Including UTRs)
   Position: mm10 chr2:32,308,471-32,353,284 Size: 44,814 Total Exon Count: 21 Strand: -
Coding Region
   Position: mm10 chr2:32,309,565-32,353,209 Size: 43,645 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:32,308,471-32,353,284)mRNA (may differ from genome)Protein (864 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsMGIPubMed
ReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: DYN1_MOUSE
DESCRIPTION: RecName: Full=Dynamin-1; EC=3.6.5.5;
FUNCTION: Microtubule-associated force-producing protein involved in producing microtubule bundles and able to bind and hydrolyze GTP. Most probably involved in vesicular trafficking processes. Involved in receptor-mediated endocytosis (By similarity).
CATALYTIC ACTIVITY: GTP + H(2)O = GDP + phosphate.
SUBUNIT: Binds SH3GL1, SH3GL2 and SH3GL3 (By similarity). Interacts with SNX9 (By similarity). Interacts with PHOCN. Interacts with MYO1E (via SH3 domain) (By similarity). Interacts with CAV1 and SH3GLB1.
INTERACTION: Q9JJV2-1:Pfn2; NbExp=2; IntAct=EBI-397785, EBI-990256;
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, cytoskeleton. Note=Microtubule-associated.
PTM: Phosphorylated in response to EGF stimulation in cells expressing truncated EGFR.
SIMILARITY: Belongs to the dynamin family.
SIMILARITY: Contains 1 GED domain.
SIMILARITY: Contains 1 PH domain.
SEQUENCE CAUTION: Sequence=BAD90284.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -30.0075-0.400 Picture PostScript Text
3' UTR -371.301094-0.339 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR022812 - Dynamin
IPR000375 - Dynamin_central
IPR001401 - Dynamin_GTPase
IPR019762 - Dynamin_GTPase_CS
IPR003130 - GED
IPR020850 - GTPase_effector_domain_GED
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology

Pfam Domains:
PF00169 - PH domain
PF00350 - Dynamin family
PF01031 - Dynamin central region
PF02212 - Dynamin GTPase effector domain

SCOP Domains:
100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
50729 - PH domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on P39053
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD EnsemblWormBase 
Protein SequenceProtein Sequence Protein SequenceProtein Sequence 
AlignmentAlignment AlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003924 GTPase activity
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0008017 microtubule binding
GO:0008022 protein C-terminus binding
GO:0016787 hydrolase activity
GO:0017124 SH3 domain binding
GO:0019901 protein kinase binding
GO:0031749 D2 dopamine receptor binding
GO:0042802 identical protein binding
GO:0044877 macromolecular complex binding
GO:0046983 protein dimerization activity
GO:0050998 nitric-oxide synthase binding

Biological Process:
GO:0000266 mitochondrial fission
GO:0002031 G-protein coupled receptor internalization
GO:0003374 dynamin family protein polymerization involved in mitochondrial fission
GO:0006897 endocytosis
GO:0006898 receptor-mediated endocytosis
GO:0007032 endosome organization
GO:0007605 sensory perception of sound
GO:0008344 adult locomotory behavior
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane
GO:0031623 receptor internalization
GO:0051262 protein tetramerization
GO:0051932 synaptic transmission, GABAergic
GO:0061025 membrane fusion
GO:0072583 clathrin-dependent endocytosis
GO:1900242 regulation of synaptic vesicle endocytosis
GO:1900244 positive regulation of synaptic vesicle endocytosis
GO:1901998 toxin transport
GO:1903423 positive regulation of synaptic vesicle recycling
GO:1904645 response to beta-amyloid

Cellular Component:
GO:0001917 photoreceptor inner segment
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005886 plasma membrane
GO:0008021 synaptic vesicle
GO:0030117 membrane coat
GO:0031966 mitochondrial membrane
GO:0032991 macromolecular complex
GO:0043196 varicosity
GO:0043209 myelin sheath
GO:0045202 synapse


-  Descriptions from all associated GenBank mRNAs
  L31396 - Mus musculus dynamin (BreDnm15) mRNA, 3'end.
BC058623 - Mus musculus dynamin 1, mRNA (cDNA clone MGC:76378 IMAGE:5706803), complete cds.
L31397 - Mus musculus dynamin (BreDnm19) mRNA, complete cds.
BC034679 - Mus musculus dynamin 1, mRNA (cDNA clone MGC:25354 IMAGE:4506865), complete cds.
AK144142 - Mus musculus colon RCB-0549 Cle-H3 cDNA, RIKEN full-length enriched library, clone:G430037A05 product:Dynamin-1 (EC 3.6.5.5) homolog [Mus musculus], full insert sequence.
AK220483 - Mus musculus mRNA for mKIAA4093 protein.
L29457 - Mus musculus dynamin (BraDnm2) mRNA, 3' cds.
L31395 - Mus musculus dynamin (BraDnm8) mRNA, 5' end.
AK011651 - Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610033N09 product:dynamin, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04144 - Endocytosis
mmu04666 - Fc gamma R-mediated phagocytosis
mmu04961 - Endocrine and other factor-regulated calcium reabsorption
mmu05100 - Bacterial invasion of epithelial cells

BioCarta from NCI Cancer Genome Anatomy Project
m_bArrestin-srcPathway - Roles of ¿-arrestin-dependent Recruitment of Src Kinases in GPCR Signaling
m_ndkDynaminPathway - Endocytotic role of NDK, Phosphins and Dynamin
m_bArrestinPathway - ¿-arrestins in GPCR Desensitization
m_barr-mapkPathway - Role of ¿-arrestins in the activation and targeting of MAP kinases

Reactome (by CSHL, EBI, and GO)

Protein P39053 (Reactome details) participates in the following event(s):

R-MMU-196017 Dynamin is recruited to the gap junction plaque
R-MMU-2130641 Translocation of TGN-lysosome vesicle to lysosome
R-MMU-190519 Internalization of gap junction plaques
R-MMU-555065 Formation of clathrin coated vesicle
R-MMU-8951498 Dissociation of Arf1:GDP, AP-1 Clathrin coated nonameric complex
R-MMU-8868236 BAR domain proteins recruit dynamin
R-MMU-8868651 Endophilins recruit synaptojanins to the clathrin-coated pit
R-MMU-8868661 Dynamin-mediated GTP hydrolysis promotes vesicle scission
R-MMU-8868648 SYNJ hydrolyze PI(4,5)P2 to PI(4)P
R-MMU-8868660 Auxilin recruits HSPA8:ATP to the clathrin-coated vesicle
R-MMU-8871194 RAB5 and GAPVD1 bind AP-2
R-MMU-8868659 Clathrin recruits auxilins to the clathrin-coated vesicle
R-MMU-196025 Formation of annular gap junctions
R-MMU-2132295 MHC class II antigen presentation
R-MMU-190873 Gap junction degradation
R-MMU-437239 Recycling pathway of L1
R-MMU-8856828 Clathrin-mediated endocytosis
R-MMU-1280218 Adaptive Immune System
R-MMU-190828 Gap junction trafficking
R-MMU-373760 L1CAM interactions
R-MMU-199991 Membrane Trafficking
R-MMU-168256 Immune System
R-MMU-157858 Gap junction trafficking and regulation
R-MMU-422475 Axon guidance
R-MMU-5653656 Vesicle-mediated transport
R-MMU-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: A2AN50, A2AN51, A2AN54, A2AN55, Dnm, DYN1_MOUSE, Kiaa4093, NM_010065, P39053, Q3UNM1, Q5DTN7, Q61358, Q61359, Q61360, Q6PDM5, Q8JZZ4, Q9CSY7, Q9QXX1, uc008jfc.1, uc008jfc.2, uc008jfc.3
UCSC ID: uc008jfc.3
RefSeq Accession: NM_010065
Protein: P39053 (aka DYN1_MOUSE)
CCDS: CCDS38102.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.