Mouse Gene Dncic2 (uc008kaj.2) Description and Page Index
  Description: Mus musculus cytoplasmic dynein intermediate chain 2 (Dncic2) mRNA, complete cds.
Transcript (Including UTRs)
   Position: mm9 chr2:71,050,003-71,067,476 Size: 17,474 Total Exon Count: 4 Strand: +
Coding Region
   Position: mm9 chr2:71,052,505-71,066,766 Size: 14,262 Coding Exon Count: 3 

Page IndexSequence and LinksMicroarray ExpressionRNA StructureOther SpeciesmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated: 2011-03-02

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:71,050,003-71,067,476)mRNA (may differ from genome)Protein (111 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsGeneNetworkPubMed
Stanford SOURCE

-  Microarray Expression Data
 
Expression ratio colors:

Rinn et. al Sex Gene Expression Data on MOE430A Chip

        
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Absolute

GNF Expression Atlas Data from U74a Mouse Chip

        
     
    
    
    
   
    
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -50.90138-0.369 Picture PostScript Text
3' UTR -194.26710-0.274 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AK019441 - Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110079H08 product:dynein, cytoplasmic, intermediate chain 2, full insert sequence.
AK141837 - Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130016E12 product:dynein, cytoplasmic, intermediate chain 2, full insert sequence.
AK150173 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530141M20 product:dynein, cytoplasmic, intermediate chain 2, full insert sequence.
AK164437 - Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230024N07 product:dynein, cytoplasmic, intermediate chain 2, full insert sequence.
AK164322 - Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130045J06 product:dynein, cytoplasmic, intermediate chain 2, full insert sequence.
GU992208 - Mus musculus cytoplasmic dynein intermediate chain 2 isoform 2.1 (Dync1i2) mRNA, complete cds, alternatively spliced.
GU992209 - Mus musculus cytoplasmic dynein intermediate chain 2 isoform 2.2 (Dync1i2) mRNA, complete cds, alternatively spliced.
GU992210 - Mus musculus cytoplasmic dynein intermediate chain 2 isoform 2.5 (Dync1i2) mRNA, complete cds, alternatively spliced.
AK168730 - Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920048E06 product:dynein, cytoplasmic, intermediate chain 2, full insert sequence.
AK088015 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430002F13 product:dynein, cytoplasmic, intermediate chain 2, full insert sequence.
AK135477 - Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820427I15 product:dynein, cytoplasmic, intermediate chain 2, full insert sequence.
GU992211 - Mus musculus cytoplasmic dynein intermediate chain 2 isoform 2.1 (Dync1i2) mRNA, complete cds, alternatively spliced.
GU992212 - Mus musculus cytoplasmic dynein intermediate chain 2 isoform 2.2 (Dync1i2) mRNA, complete cds, alternatively spliced.
AF063231 - Mus musculus cytoplasmic dynein intermediate chain 2 (Dncic2) mRNA, complete cds.
BC139374 - Mus musculus dynein cytoplasmic 1 intermediate chain 2, mRNA (cDNA clone MGC:171001 IMAGE:8862396), complete cds.
BC139375 - Mus musculus dynein cytoplasmic 1 intermediate chain 2, mRNA (cDNA clone MGC:171002 IMAGE:8862397), complete cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04145 - Phagosome
mmu04962 - Vasopressin-regulated water reabsorption

-  Other Names for This Gene
  Alternate Gene Symbols: AK135477, uc008kaj.1
UCSC ID: uc008kaj.2
RefSeq Accession: NM_010064

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK135477.1
exon count: 4CDS single in 3' UTR: no RNA size: 2237
ORF size: 336CDS single in intron: no Alignment % ID: 99.91
txCdsPredict score: 872.00frame shift in genome: no % Coverage: 50.07
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 729# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.