Mouse Gene Pde11a (ENSMUST00000099992.9) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus phosphodiesterase 11A (Pde11a), mRNA. (from RefSeq NM_001081033)
Gencode Transcript: ENSMUST00000099992.9
Gencode Gene: ENSMUSG00000075270.11
Transcript (Including UTRs)
   Position: mm10 chr2:75,989,912-76,338,774 Size: 348,863 Total Exon Count: 20 Strand: -
Coding Region
   Position: mm10 chr2:75,991,132-76,338,607 Size: 347,476 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:75,989,912-76,338,774)mRNA (may differ from genome)Protein (933 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: PDE11_MOUSE
DESCRIPTION: RecName: Full=Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A; EC=3.1.4.17; EC=3.1.4.35; AltName: Full=cAMP and cGMP phosphodiesterase 11A;
FUNCTION: Plays a role in signal transduction by regulating the intracellular concentration of cyclic nucleotides cAMP and cGMP. Catalyzes the hydrolysis of both cAMP and cGMP to 5'-AMP and 5'- GMP, respectively (By similarity).
CATALYTIC ACTIVITY: Guanosine 3',5'-cyclic phosphate + H(2)O = guanosine 5'-phosphate.
CATALYTIC ACTIVITY: Adenosine 3',5'-cyclic phosphate + H(2)O = adenosine 5'-phosphate.
COFACTOR: Binds 2 divalent metal cations per subunit. Site 1 may preferentially bind zinc ions, while site 2 has a preference for magnesium and/or manganese ions (By similarity).
ENZYME REGULATION: Inhibited by 3-isobutyl-1-methylxanthine (IBMX), zaprinast and dipyridamole. cGMP acts as an allosteric activator (By similarity).
SUBCELLULAR LOCATION: Cytoplasm, cytosol (By similarity).
TISSUE SPECIFICITY: Expressed in testis and developing spermatoza.
DOMAIN: The tandem GAF domains bind cGMP, and regulate enzyme activity. The binding of cGMP stimulates enzyme activity (By similarity).
DISRUPTION PHENOTYPE: Mice live well and have no impaired fertility. They do however display reduced sperm concentration, rate of forward progression and percentage of live spermatozoa. Pre-ejaculated sperm display increased premature/spontaneous capacitance.
SIMILARITY: Belongs to the cyclic nucleotide phosphodiesterase family.
SIMILARITY: Contains 2 GAF domains.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -54.70167-0.328 Picture PostScript Text
3' UTR -343.301220-0.281 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003018 - GAF
IPR003607 - HD/PDEase_dom
IPR023088 - PDEase
IPR002073 - PDEase_catalytic_dom
IPR023174 - PDEase_CS

Pfam Domains:
PF00233 - 3'5'-cyclic nucleotide phosphodiesterase
PF01590 - GAF domain
PF13492 - GAF domain

SCOP Domains:
109604 - HD-domain/PDEase-like
55781 - GAF domain-like
103190 - Sensory domain-like
63411 - LuxS/MPP-like metallohydrolase

ModBase Predicted Comparative 3D Structure on P0C1Q2
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsemblEnsembl  
Protein SequenceProtein Sequence Protein Sequence  
AlignmentAlignment Alignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0004112 cyclic-nucleotide phosphodiesterase activity
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0004118 cGMP-stimulated cyclic-nucleotide phosphodiesterase activity
GO:0008081 phosphoric diester hydrolase activity
GO:0016787 hydrolase activity
GO:0030552 cAMP binding
GO:0030553 cGMP binding
GO:0046872 metal ion binding
GO:0047555 3',5'-cyclic-GMP phosphodiesterase activity

Biological Process:
GO:0006198 cAMP catabolic process
GO:0007165 signal transduction
GO:0008152 metabolic process
GO:0046069 cGMP catabolic process

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0043204 perikaryon


-  Descriptions from all associated GenBank mRNAs
  BC158125 - Mus musculus phosphodiesterase 11A, mRNA (cDNA clone MGC:190010 IMAGE:9088197), complete cds.
AK042383 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630086N24 product:PHOSPHODIESTERASE 11A2 homolog [Rattus norvegicus], full insert sequence.
AK050924 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030036L15 product:unclassifiable, full insert sequence.
AK192697 - Mus musculus cDNA, clone:Y1G0109K16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000046733, based on BLAT search.
AK018171 - Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330414F14 product:unclassifiable, full insert sequence.
AK204758 - Mus musculus cDNA, clone:Y1G0149I11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000046733, based on BLAT search.
AK194675 - Mus musculus cDNA, clone:Y1G0116B20, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000046733, based on BLAT search.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00230 - Purine metabolism

Reactome (by CSHL, EBI, and GO)

Protein P0C1Q2 (Reactome details) participates in the following event(s):

R-MMU-418456 cGMP is degraded by PDEs
R-MMU-418553 cAMP degradation by Phosphodiesterases
R-MMU-418457 cGMP effects
R-MMU-418555 G alpha (s) signalling events
R-MMU-392154 Nitric oxide stimulates guanylate cyclase
R-MMU-388396 GPCR downstream signalling
R-MMU-418346 Platelet homeostasis
R-MMU-372790 Signaling by GPCR
R-MMU-109582 Hemostasis
R-MMU-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A2AKR2, NM_001081033, P0C1Q2, PDE11_MOUSE, uc008kex.1, uc008kex.2
UCSC ID: uc008kex.2
RefSeq Accession: NM_001081033
Protein: P0C1Q2 (aka PDE11_MOUSE)
CCDS: CCDS38152.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.