Mouse Gene Itpa (ENSMUST00000103193.4) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus inosine triphosphatase (nucleoside triphosphate pyrophosphatase) (Itpa), transcript variant 1, mRNA. (from RefSeq NM_025922)
Gencode Transcript: ENSMUST00000103193.4
Gencode Gene: ENSMUSG00000074797.11
Transcript (Including UTRs)
   Position: mm10 chr2:130,667,610-130,681,614 Size: 14,005 Total Exon Count: 8 Strand: +
Coding Region
   Position: mm10 chr2:130,667,870-130,681,081 Size: 13,212 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:130,667,610-130,681,614)mRNA (may differ from genome)Protein (198 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: ITPA_MOUSE
DESCRIPTION: RecName: Full=Inosine triphosphate pyrophosphatase; Short=ITPase; Short=Inosine triphosphatase; EC=3.6.1.19; AltName: Full=Non-canonical purine NTP pyrophosphatase; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase;
FUNCTION: Pyrophosphatase that hydrolyzes the non-canonical purine nucleotides inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) as well as 2'-deoxy-N-6-hydroxylaminopurine triposphate (dHAPTP) and xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions.
CATALYTIC ACTIVITY: A nucleoside triphosphate + H(2)O = a nucleotide + diphosphate.
COFACTOR: Binds 1 divalent metal cation ion per subunit; can use either magnesium or manganese (By similarity).
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=24.9 uM for dITP; KM=38.4 uM for dHAPTP; KM=667 uM for dGTP; Note=Vmax values are similar for dITP, dHAPTP and dGTP;
SUBUNIT: Homodimer (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
DISRUPTION PHENOTYPE: Accumulates ITP in erythrocytes. Accumulates inosine in RNA and deoxyinosine in DNA.
SIMILARITY: Belongs to the HAM1 NTPase family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -102.20260-0.393 Picture PostScript Text
3' UTR -184.60533-0.346 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002637 - Ham1p-like

Pfam Domains:
PF01725 - Ham1 family

SCOP Domains:
52972 - ITPase-like

ModBase Predicted Comparative 3D Structure on Q9D892
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserGenome BrowserNo ortholog
Gene Details    Gene Details
Gene Sorter    Gene Sorter
GenBankRGDEnsemblEnsemblWormBaseSGD
Protein SequenceProtein Sequence Protein SequenceProtein Sequence 
AlignmentAlignment AlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004551 nucleotide diphosphatase activity
GO:0016787 hydrolase activity
GO:0035529 NADH pyrophosphatase activity
GO:0035870 dITP diphosphatase activity
GO:0036220 ITP diphosphatase activity
GO:0036222 XTP diphosphatase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0047429 nucleoside-triphosphate diphosphatase activity

Biological Process:
GO:0006193 ITP catabolic process
GO:0009117 nucleotide metabolic process
GO:0009143 nucleoside triphosphate catabolic process
GO:0051276 chromosome organization

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK138101 - Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130093I16 product:inosine triphosphatase (nucleoside triphosphate pyrophosphatase), full insert sequence.
AK008279 - Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010016I08 product:PUTATIVE ONCOGENE PROTEIN HLC14-06-P (INOSINE TRIPHOSPHATASE) (NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHATASE) homolog [Homo sapiens], full insert sequence.
AK153904 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430004G13 product:inosine triphosphatase (nucleoside triphosphate pyrophosphatase), full insert sequence.
AB100501 - Mus musculus Itpa mRNA for inosine triphosphate pyrophosphatase, partial cds.
AK009248 - Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310009D09 product:PUTATIVE ONCOGENE PROTEIN HLC14-06-P (INOSINE TRIPHOSPHATASE) (NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHATASE) homolog [Homo sapiens], full insert sequence.
BC026508 - Mus musculus inosine triphosphatase (nucleoside triphosphate pyrophosphatase), mRNA (cDNA clone MGC:31641 IMAGE:4512398), complete cds.
BC094466 - Mus musculus inosine triphosphatase (nucleoside triphosphate pyrophosphatase), mRNA (cDNA clone MGC:103099 IMAGE:4936811), complete cds.
AK153806 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:C920001J06 product:inosine triphosphatase (nucleoside triphosphate pyrophosphatase), full insert sequence.
AK139770 - Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020016A08 product:inosine triphosphatase (nucleoside triphosphate pyrophosphatase), full insert sequence.
LF262021 - JP 2014500723-A/69524: Polycomb-Associated Non-Coding RNAs.
AK035011 - Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430073I16 product:unclassifiable, full insert sequence.
LF262020 - JP 2014500723-A/69523: Polycomb-Associated Non-Coding RNAs.
MA497598 - JP 2018138019-A/69524: Polycomb-Associated Non-Coding RNAs.
MA497597 - JP 2018138019-A/69523: Polycomb-Associated Non-Coding RNAs.
LF262019 - JP 2014500723-A/69522: Polycomb-Associated Non-Coding RNAs.
MA497596 - JP 2018138019-A/69522: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00230 - Purine metabolism
mmu00240 - Pyrimidine metabolism
mmu00983 - Drug metabolism - other enzymes
mmu01100 - Metabolic pathways

Reactome (by CSHL, EBI, and GO)

Protein Q9D892 (Reactome details) participates in the following event(s):

R-MMU-2509827 ITPA hydrolyses ITP to IMP
R-MMU-2509831 ITPA hydrolyses XTP to XMP
R-MMU-2509838 ITPA hydrolyses dITP to dIMP
R-MMU-74259 Purine catabolism
R-MMU-8956319 Nucleobase catabolism
R-MMU-15869 Metabolism of nucleotides
R-MMU-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ITPA_MOUSE, NM_025922, Q8R0Q8, Q9D892, uc008mju.1, uc008mju.2
UCSC ID: uc008mju.2
RefSeq Accession: NM_025922
Protein: Q9D892 (aka ITPA_MOUSE)
CCDS: CCDS16748.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.