Mouse Gene Src (ENSMUST00000029175.13) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus Rous sarcoma oncogene (Src), transcript variant 2, mRNA. (from RefSeq NM_001025395)
Gencode Transcript: ENSMUST00000029175.13
Gencode Gene: ENSMUSG00000027646.15
Transcript (Including UTRs)
   Position: mm10 chr2:157,424,280-157,471,862 Size: 47,583 Total Exon Count: 14 Strand: +
Coding Region
   Position: mm10 chr2:157,457,085-157,469,961 Size: 12,877 Coding Exon Count: 11 

Page IndexSequence and LinksPrimersCTDRNA StructureOther Species
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:157,424,280-157,471,862)mRNA (may differ from genome)Protein (535 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsPubMed
SOURCEUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -179.40397-0.452 Picture PostScript Text
3' UTR -790.201901-0.416 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK146056 - Mus musculus 12 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530027F01 product:Rous sarcoma oncogene, full insert sequence.
AK200868 - Mus musculus cDNA, clone:Y1G0136D22, strand:unspecified.
AK182983 - Mus musculus cDNA, clone:Y0G0124F19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
AK182192 - Mus musculus cDNA, clone:Y0G0121C11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
M17031 - Mouse neuronal proto-oncogene c-src mRNA encoding tyrosine-specific protein kinase, complete cds.
AK204082 - Mus musculus cDNA, clone:Y1G0147E05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
AK190301 - Mus musculus cDNA, clone:Y1G0102F13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
AK201096 - Mus musculus cDNA, clone:Y1G0136P18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
AK017629 - Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730439F15 product:Rous sarcoma oncogene, full insert sequence.
AK216314 - Mus musculus cDNA, clone:Y2G0137P08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
AK182969 - Mus musculus cDNA, clone:Y0G0124F01, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
AK189521 - Mus musculus cDNA, clone:Y0G0149H14, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
DQ699676 - Mus musculus piRNA piR-114998, complete sequence.
AK208623 - Mus musculus cDNA, clone:Y2G0112D16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
AK192339 - Mus musculus cDNA, clone:Y1G0108J11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
AK199196 - Mus musculus cDNA, clone:Y1G0130H09, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04012 - ErbB signaling pathway
mmu04144 - Endocytosis
mmu04370 - VEGF signaling pathway
mmu04510 - Focal adhesion
mmu04520 - Adherens junction
mmu04530 - Tight junction
mmu04540 - Gap junction
mmu04912 - GnRH signaling pathway
mmu05100 - Bacterial invasion of epithelial cells

-  Other Names for This Gene
  Alternate Gene Symbols: F8WI90, NM_001025395, uc008npb.1, uc008npb.2
UCSC ID: uc008npb.2
RefSeq Accession: NM_001025395
CCDS: CCDS16978.1, CCDS38305.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.