Mouse Gene Src (ENSMUST00000029175.13) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus Rous sarcoma oncogene (Src), transcript variant 2, mRNA. (from RefSeq NM_001025395)
Gencode Transcript: ENSMUST00000029175.13
Gencode Gene: ENSMUSG00000027646.15
Transcript (Including UTRs)
Position: mm10 chr2:157,424,280-157,471,862 Size: 47,583 Total Exon Count: 14 Strand: +
Coding Region
Position: mm10 chr2:157,457,085-157,469,961 Size: 12,877 Coding Exon Count: 11
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
AK146056 - Mus musculus 12 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530027F01 product:Rous sarcoma oncogene, full insert sequence.AK200868 - Mus musculus cDNA, clone:Y1G0136D22, strand:unspecified.AK182983 - Mus musculus cDNA, clone:Y0G0124F19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.AK182192 - Mus musculus cDNA, clone:Y0G0121C11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.M17031 - Mouse neuronal proto-oncogene c-src mRNA encoding tyrosine-specific protein kinase, complete cds.AK204082 - Mus musculus cDNA, clone:Y1G0147E05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.AK190301 - Mus musculus cDNA, clone:Y1G0102F13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.AK201096 - Mus musculus cDNA, clone:Y1G0136P18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.AK017629 - Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730439F15 product:Rous sarcoma oncogene, full insert sequence.AK216314 - Mus musculus cDNA, clone:Y2G0137P08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.AK182969 - Mus musculus cDNA, clone:Y0G0124F01, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.AK189521 - Mus musculus cDNA, clone:Y0G0149H14, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.DQ699676 - Mus musculus piRNA piR-114998, complete sequence.AK208623 - Mus musculus cDNA, clone:Y2G0112D16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.AK192339 - Mus musculus cDNA, clone:Y1G0108J11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.AK199196 - Mus musculus cDNA, clone:Y1G0130H09, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000054007, based on BLAT search.
Biochemical and Signaling Pathways
Other Names for This Gene
Gene Model Information
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for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.