Mouse Gene Postn (ENSMUST00000117373.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus periostin, osteoblast specific factor (Postn), transcript variant 5, mRNA. (from RefSeq NM_001313899)
RefSeq Summary (NM_001198766): This gene encodes a secreted extracellular matrix protein that functions in tissue development and regeneration, including wound healing and ventricular remodeling following myocardial infarction. The encoded protein binds to integrins to support adhesion and migration of epithelial cells. This protein plays a role in cancer stem cell maintenance and metastasis. Mice lacking this gene exhibit cardiac valve disease, and skeletal and dental defects. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Sep 2015].
Gencode Transcript: ENSMUST00000117373.7
Gencode Gene: ENSMUSG00000027750.16
Transcript (Including UTRs)
   Position: mm10 chr3:54,361,109-54,391,034 Size: 29,926 Total Exon Count: 21 Strand: +
Coding Region
   Position: mm10 chr3:54,361,143-54,390,299 Size: 29,157 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:54,361,109-54,391,034)mRNA (may differ from genome)Protein (783 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: POSTN_MOUSE
DESCRIPTION: RecName: Full=Periostin; Short=PN; AltName: Full=Osteoblast-specific factor 2; Short=OSF-2; Flags: Precursor;
FUNCTION: Binds to heparin. Induces cell attachment and spreading and plays a role in cell adhesion. May play a role in extracellular matrix mineralization.
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix.
TISSUE SPECIFICITY: Preferentially expressed in periosteum and periodontal ligament. Also expressed in the developing and adult heart.
DEVELOPMENTAL STAGE: In the heart, expressed from embryonic day 10.5. Continues to be strongly expressed throughout cardiac development and into adulthood.
INDUCTION: By TGF-beta.
PTM: Gamma-carboxyglutamate residues are formed by vitamin K dependent carboxylation. These residues are essential for the binding of calcium.
SIMILARITY: Contains 1 EMI domain.
SIMILARITY: Contains 4 FAS1 domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D001564 Benzo(a)pyrene
  • D004317 Doxorubicin
  • D004997 Ethinyl Estradiol
  • D019808 Losartan
  • D010634 Phenobarbital
  • D013749 Tetrachlorodibenzodioxin
  • D014212 Tretinoin
  • C479799 (E)-4-((2-N-(4-methoxybenzenesulfonyl)amino)stilbazole)1-oxide
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • C093973 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one
          more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -5.9034-0.174 Picture PostScript Text
3' UTR -177.80735-0.242 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011489 - EMI_domain
IPR000782 - FAS1_domain
IPR016666 - TGFb-ind_bIGH3/osteoblast_fac2

Pfam Domains:
PF02469 - Fasciclin domain

SCOP Domains:
82153 - FAS1 domain

ModBase Predicted Comparative 3D Structure on Q62009
FrontTopSide
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008201 heparin binding
GO:0046872 metal ion binding

Biological Process:
GO:0001666 response to hypoxia
GO:0001953 negative regulation of cell-matrix adhesion
GO:0003073 regulation of systemic arterial blood pressure
GO:0007155 cell adhesion
GO:0008593 regulation of Notch signaling pathway
GO:0009612 response to mechanical stimulus
GO:0009888 tissue development
GO:0014850 response to muscle activity
GO:0014911 positive regulation of smooth muscle cell migration
GO:0030198 extracellular matrix organization
GO:0032355 response to estradiol
GO:0042060 wound healing
GO:0044344 cellular response to fibroblast growth factor stimulus
GO:0071307 cellular response to vitamin K
GO:0071356 cellular response to tumor necrosis factor
GO:0071560 cellular response to transforming growth factor beta stimulus
GO:1900025 negative regulation of substrate adhesion-dependent cell spreading
GO:1904209 positive regulation of chemokine (C-C motif) ligand 2 secretion
GO:1990138 neuron projection extension
GO:1990523 bone regeneration

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005802 trans-Golgi network
GO:0031012 extracellular matrix
GO:0031594 neuromuscular junction


-  Descriptions from all associated GenBank mRNAs
  LF193921 - JP 2014500723-A/1424: Polycomb-Associated Non-Coding RNAs.
AK030756 - Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730533H08 product:osteoblast specific factor 2 (fasciclin I-like), full insert sequence.
AK154049 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430029E10 product:periostin, osteoblast specific factor, full insert sequence.
D13664 - Mus musculus osf-2 mRNA for osteoblast specific factor 2, complete cds.
E05655 - cDNA encoding mouse OSF-2.
BC007141 - Mus musculus cDNA clone IMAGE:3592210, containing frame-shift errors.
AY651928 - Mus musculus periostin-like factor protein (Postn) mRNA, complete cds, alternatively spliced.
BC031449 - Mus musculus periostin, osteoblast specific factor, mRNA (cDNA clone MGC:25368 IMAGE:4457222), complete cds.
KM117171 - Mus musculus strain CH3 periostin isoform M1 (Postn) mRNA, complete cds.
KM117172 - Mus musculus strain CH3 periostin isoform M2 (Postn) mRNA, complete cds.
LF267167 - JP 2014500723-A/74670: Polycomb-Associated Non-Coding RNAs.
LF267168 - JP 2014500723-A/74671: Polycomb-Associated Non-Coding RNAs.
LF267170 - JP 2014500723-A/74673: Polycomb-Associated Non-Coding RNAs.
LF267171 - JP 2014500723-A/74674: Polycomb-Associated Non-Coding RNAs.
LF267172 - JP 2014500723-A/74675: Polycomb-Associated Non-Coding RNAs.
LF267173 - JP 2014500723-A/74676: Polycomb-Associated Non-Coding RNAs.
LF267174 - JP 2014500723-A/74677: Polycomb-Associated Non-Coding RNAs.
LF267175 - JP 2014500723-A/74678: Polycomb-Associated Non-Coding RNAs.
LF267176 - JP 2014500723-A/74679: Polycomb-Associated Non-Coding RNAs.
LF267177 - JP 2014500723-A/74680: Polycomb-Associated Non-Coding RNAs.
LF267179 - JP 2014500723-A/74682: Polycomb-Associated Non-Coding RNAs.
LF267180 - JP 2014500723-A/74683: Polycomb-Associated Non-Coding RNAs.
LF267181 - JP 2014500723-A/74684: Polycomb-Associated Non-Coding RNAs.
LF267182 - JP 2014500723-A/74685: Polycomb-Associated Non-Coding RNAs.
LF267184 - JP 2014500723-A/74687: Polycomb-Associated Non-Coding RNAs.
LF267185 - JP 2014500723-A/74688: Polycomb-Associated Non-Coding RNAs.
LF267186 - JP 2014500723-A/74689: Polycomb-Associated Non-Coding RNAs.
LF267187 - JP 2014500723-A/74690: Polycomb-Associated Non-Coding RNAs.
AK163070 - Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530013A09 product:periostin, osteoblast specific factor, full insert sequence.
LF267188 - JP 2014500723-A/74691: Polycomb-Associated Non-Coding RNAs.
LF267189 - JP 2014500723-A/74692: Polycomb-Associated Non-Coding RNAs.
LF267190 - JP 2014500723-A/74693: Polycomb-Associated Non-Coding RNAs.
LF267194 - JP 2014500723-A/74697: Polycomb-Associated Non-Coding RNAs.
LF267195 - JP 2014500723-A/74698: Polycomb-Associated Non-Coding RNAs.
LF267196 - JP 2014500723-A/74699: Polycomb-Associated Non-Coding RNAs.
LF267197 - JP 2014500723-A/74700: Polycomb-Associated Non-Coding RNAs.
LF267198 - JP 2014500723-A/74701: Polycomb-Associated Non-Coding RNAs.
MA429498 - JP 2018138019-A/1424: Polycomb-Associated Non-Coding RNAs.
MA502744 - JP 2018138019-A/74670: Polycomb-Associated Non-Coding RNAs.
MA502745 - JP 2018138019-A/74671: Polycomb-Associated Non-Coding RNAs.
MA502747 - JP 2018138019-A/74673: Polycomb-Associated Non-Coding RNAs.
MA502748 - JP 2018138019-A/74674: Polycomb-Associated Non-Coding RNAs.
MA502749 - JP 2018138019-A/74675: Polycomb-Associated Non-Coding RNAs.
MA502750 - JP 2018138019-A/74676: Polycomb-Associated Non-Coding RNAs.
MA502751 - JP 2018138019-A/74677: Polycomb-Associated Non-Coding RNAs.
MA502752 - JP 2018138019-A/74678: Polycomb-Associated Non-Coding RNAs.
MA502753 - JP 2018138019-A/74679: Polycomb-Associated Non-Coding RNAs.
MA502754 - JP 2018138019-A/74680: Polycomb-Associated Non-Coding RNAs.
MA502756 - JP 2018138019-A/74682: Polycomb-Associated Non-Coding RNAs.
MA502757 - JP 2018138019-A/74683: Polycomb-Associated Non-Coding RNAs.
MA502758 - JP 2018138019-A/74684: Polycomb-Associated Non-Coding RNAs.
MA502759 - JP 2018138019-A/74685: Polycomb-Associated Non-Coding RNAs.
MA502761 - JP 2018138019-A/74687: Polycomb-Associated Non-Coding RNAs.
MA502762 - JP 2018138019-A/74688: Polycomb-Associated Non-Coding RNAs.
MA502763 - JP 2018138019-A/74689: Polycomb-Associated Non-Coding RNAs.
MA502764 - JP 2018138019-A/74690: Polycomb-Associated Non-Coding RNAs.
MA502765 - JP 2018138019-A/74691: Polycomb-Associated Non-Coding RNAs.
MA502766 - JP 2018138019-A/74692: Polycomb-Associated Non-Coding RNAs.
MA502767 - JP 2018138019-A/74693: Polycomb-Associated Non-Coding RNAs.
MA502771 - JP 2018138019-A/74697: Polycomb-Associated Non-Coding RNAs.
MA502772 - JP 2018138019-A/74698: Polycomb-Associated Non-Coding RNAs.
MA502773 - JP 2018138019-A/74699: Polycomb-Associated Non-Coding RNAs.
MA502774 - JP 2018138019-A/74700: Polycomb-Associated Non-Coding RNAs.
MA502775 - JP 2018138019-A/74701: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001313899, Osf2, POSTN_MOUSE, Q62009, Q8BMJ6, Q8K1K0, uc008pfj.1, uc008pfj.2, uc008pfj.3
UCSC ID: uc008pfj.3
RefSeq Accession: NM_001198766
Protein: Q62009 (aka POSTN_MOUSE or POSN_MOUSE)
CCDS: CCDS17351.1, CCDS57211.1, CCDS57212.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.