Mouse Gene Hint2 (ENSMUST00000030192.4) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus histidine triad nucleotide binding protein 2 (Hint2), mRNA. (from RefSeq NM_026871)
Gencode Transcript: ENSMUST00000030192.4
Gencode Gene: ENSMUSG00000028470.10
Transcript (Including UTRs)
   Position: mm10 chr4:43,654,229-43,656,466 Size: 2,238 Total Exon Count: 5 Strand: -
Coding Region
   Position: mm10 chr4:43,654,320-43,656,439 Size: 2,120 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:43,654,229-43,656,466)mRNA (may differ from genome)Protein (163 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: HINT2_MOUSE
DESCRIPTION: RecName: Full=Histidine triad nucleotide-binding protein 2, mitochondrial; Short=HINT-2; EC=3.-.-.-; AltName: Full=HINT-3; Flags: Precursor;
FUNCTION: Hydrolase probably involved in steroid biosynthesis. May play a role in apoptosis. Has adenosine phosphoramidase activity (By similarity).
SUBCELLULAR LOCATION: Mitochondrion (By similarity).
DOMAIN: The histidine triad, also called HIT motif, forms part of the binding loop for the alpha-phosphate of purine mononucleotide.
SIMILARITY: Belongs to the HINT family.
SIMILARITY: Contains 1 HIT domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -5.8027-0.215 Picture PostScript Text
3' UTR -26.1091-0.287 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019808 - Histidine_triad_CS
IPR001310 - Histidine_triad_HIT
IPR011146 - HIT-like

Pfam Domains:
PF01230 - HIT domain
PF11969 - Scavenger mRNA decapping enzyme C-term binding

SCOP Domains:
54197 - HIT-like

ModBase Predicted Comparative 3D Structure on Q9D0S9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0016787 hydrolase activity

Biological Process:
GO:0006629 lipid metabolic process
GO:0006694 steroid biosynthetic process
GO:0006915 apoptotic process
GO:0016042 lipid catabolic process
GO:2000757 negative regulation of peptidyl-lysine acetylation

Cellular Component:
GO:0005730 nucleolus
GO:0005739 mitochondrion


-  Descriptions from all associated GenBank mRNAs
  LF194361 - JP 2014500723-A/1864: Polycomb-Associated Non-Coding RNAs.
BC086940 - Mus musculus histidine triad nucleotide binding protein 2, mRNA (cDNA clone MGC:107703 IMAGE:6775318), complete cds.
AF356874 - Mus musculus histidine triad protein 3 mRNA, complete cds.
AK004497 - Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1190005L05 product:HIT-17KDA (PKCI-1-RELATED HIT PROTEIN) homolog [Homo sapiens], full insert sequence.
AK170135 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630021D21 product:histidine triad nucleotide binding protein 2, full insert sequence.
LF271256 - JP 2014500723-A/78759: Polycomb-Associated Non-Coding RNAs.
MA429938 - JP 2018138019-A/1864: Polycomb-Associated Non-Coding RNAs.
MA506833 - JP 2018138019-A/78759: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: HINT2_MOUSE, NM_026871, Q9D0S9, uc008sqs.1, uc008sqs.2
UCSC ID: uc008sqs.2
RefSeq Accession: NM_026871
Protein: Q9D0S9 (aka HINT2_MOUSE or HNT2_MOUSE)
CCDS: CCDS18106.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.