Mouse Gene Mpdz (ENSMUST00000142273.1) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mpdz (from geneSymbol)
Gencode Transcript: ENSMUST00000142273.1
Gencode Gene: ENSMUSG00000028402.18
Transcript (Including UTRs)
   Position: mm10 chr4:81,416,540-81,442,815 Size: 26,276 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksPrimersCTDOther SpeciesmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:81,416,540-81,442,815)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
EnsemblExonPrimerGeneCardsPubMedSOURCEWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AF326535 - Mus musculus DBA1/J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326536 - Mus musculus PL/J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AJ131869 - Mus musculus mRNA for multiple PDZ domain protein.
BC138045 - Mus musculus multiple PDZ domain protein, mRNA (cDNA clone MGC:169669 IMAGE:8861064), complete cds.
BC145115 - Mus musculus cDNA clone IMAGE:9053663.
BC145117 - Mus musculus multiple PDZ domain protein, mRNA (cDNA clone MGC:178673 IMAGE:9053665), complete cds.
AF326537 - Mus musculus SJL/J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326526 - Mus musculus WSR2 multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326527 - Mus musculus A/HeJ multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326528 - Mus musculus AKR/J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326529 - Mus musculus BALB/cJ multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326530 - Mus musculus C3H/J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326532 - Mus musculus C57Br/cdJ multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326533 - Mus musculus C57L/J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326534 - Mus musculus CBA/J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326538 - Mus musculus SWR/J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326540 - Mus musculus WSP2 multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326541 - Mus musculus WSR1 multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326542 - Mus musculus 129/J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326543 - Mus musculus CE/J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326531 - Mus musculus C57BL/6J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326539 - Mus musculus WSP1 multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AF326544 - Mus musculus DBA/2J multiple PDZ domain protein (Mpdz) mRNA, complete cds.
AK164213 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030005B15 product:multiple PDZ domain protein, full insert sequence.
AK160603 - Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610024D01 product:multiple PDZ domain protein, full insert sequence.
AK051782 - Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130079L03 product:multiple PDZ domain protein, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04530 - Tight junction

-  Other Names for This Gene
  Alternate Gene Symbols: AK160603, uc008tjy.1, uc008tjy.2, uc008tjy.3
UCSC ID: uc008tjy.3
RefSeq Accession: NM_001305286

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.