Mouse Gene Espn (ENSMUST00000105657.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus espin (Espn), transcript variant 5, mRNA. (from RefSeq NM_207690)
Gencode Transcript: ENSMUST00000105657.8
Gencode Gene: ENSMUSG00000028943.18
Transcript (Including UTRs)
   Position: mm10 chr4:152,121,121-152,136,325 Size: 15,205 Total Exon Count: 9 Strand: -
Coding Region
   Position: mm10 chr4:152,121,121-152,136,282 Size: 15,162 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:152,121,121-152,136,325)mRNA (may differ from genome)Protein (443 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsMGIPubMed
SOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: ESPN_MOUSE
DESCRIPTION: RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein;
FUNCTION: Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.
SUBUNIT: Monomer. Binds F-actin in a Ca(2+)-resistant fashion. Interacts (via N-terminal) with BAIAP2 (via SH3-domain). Interacts with PFN2.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton. Cell projection, stereocilium. Cell projection, microvillus. Cell junction.
SUBCELLULAR LOCATION: Isoform 2: Cytoplasm, cytoskeleton. Cell projection, dendritic spine.
SUBCELLULAR LOCATION: Isoform 3: Cytoplasm, cytoskeleton. Cell projection, dendritic spine.
SUBCELLULAR LOCATION: Isoform 4: Cytoplasm, cytoskeleton. Cell projection, dendritic spine.
SUBCELLULAR LOCATION: Isoform 5: Cytoplasm, cytoskeleton. Cell projection, dendritic spine.
SUBCELLULAR LOCATION: Isoform 8: Cytoplasm, cytoskeleton. Cell junction. Note=Isoform 8 localizes to parallel actin bundles of ectoplasmic specializations between neighboring Sertoli cells and at sites where Sertoli cells contact the heads of elongate spermatids.
TISSUE SPECIFICITY: Expressed at high concentration in the microvillar parallel actin bundle (PAB) of hair cells stereocilia in the cochlea and vestibular system. Detected also at high levels of a number of other sensory cell types, including taste receptor cells, solitary chemoreceptor cells, vomeronasal sensory neurons and Merkel cells. Isoforms 2, 3, 4 and 5 are expressed in Purkinje cells dentritic spines.
DOMAIN: The WH2-domain binds actin monomer and mediates actin bundle assembly.
MISCELLANEOUS: Jerker mice has a frameshift mutation that affect the espin C-terminus. This mutation cause deafness, vestibular dysfunction and hair cell degeneration.
SIMILARITY: Contains 9 ANK repeats.
SIMILARITY: Contains 1 WH2 domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -5.4043-0.126 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom
IPR003124 - WH2_dom

Pfam Domains:
PF02205 - WH2 motif

ModBase Predicted Comparative 3D Structure on Q9ET47
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0005515 protein binding
GO:0017124 SH3 domain binding
GO:0051015 actin filament binding

Biological Process:
GO:0007605 sensory perception of sound
GO:0007626 locomotory behavior
GO:0030046 parallel actin filament bundle assembly
GO:0051017 actin filament bundle assembly
GO:0051491 positive regulation of filopodium assembly
GO:0051494 negative regulation of cytoskeleton organization
GO:0051639 actin filament network formation

Cellular Component:
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005902 microvillus
GO:0005903 brush border
GO:0015629 actin cytoskeleton
GO:0030054 cell junction
GO:0031941 filamentous actin
GO:0032420 stereocilium
GO:0032421 stereocilium bundle
GO:0032426 stereocilium tip
GO:0042995 cell projection
GO:0043197 dendritic spine


-  Descriptions from all associated GenBank mRNAs
  BC057888 - Mus musculus espin, mRNA (cDNA clone IMAGE:4982096), complete cds.
BC044723 - Mus musculus espin, mRNA (cDNA clone IMAGE:6395900), complete cds.
AK002284 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610007F01 product:espin, full insert sequence.
AK165010 - Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130202O15 product:espin, full insert sequence.
AY587570 - Mus musculus espin isoform 3A mRNA, complete cds, alternatively spliced.
AY587571 - Mus musculus espin isoform 3B mRNA, complete cds, alternatively spliced.
AF540942 - Mus musculus Purkinje cell espin isoform 1 (Espn) mRNA, complete cds; alternatively spliced.
AF540943 - Mus musculus Purkinje cell espin isoform 1+ (Espn) mRNA, complete cds; alternatively spliced.
AF540944 - Mus musculus Purkinje cell espin isoform 2 (Espn) mRNA, complete cds; alternatively spliced.
AF540945 - Mus musculus Purkinje cell espin isoform 2+ (Espn) mRNA, complete cds; alternatively spliced.
AF239886 - Mus musculus espin mRNA, complete cds.
AF134857 - Mus musculus espin mRNA, partial cds.
AK146701 - Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920043M05 product:espin, full insert sequence.
AK145160 - Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930006D15 product:espin, full insert sequence.
AK181113 - Mus musculus cDNA, clone:Y0G0116P19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000070034, based on BLAT search.

-  Other Names for This Gene
  Alternate Gene Symbols: A2AK06, A2AK09, A2AK13, B1AWP3, B1AWP6, B1AWQ2, ESPN_MOUSE, NM_207690, Q6GYS0, Q6GYS1, Q80ZC0, Q80ZC1, Q80ZC2, Q80ZC3, Q9ET47, Q9QY27, uc008vzr.1, uc008vzr.2
UCSC ID: uc008vzr.2
RefSeq Accession: NM_207690
Protein: Q9ET47 (aka ESPN_MOUSE)
CCDS: CCDS18991.1, CCDS18992.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.