Mouse Gene Espn (uc008vzv.1) Description and Page Index
  Description: espin isoform 3
Transcript (Including UTRs)
   Position: mm9 chr4:151,501,903-151,505,966 Size: 4,064 Total Exon Count: 5 Strand: -
Coding Region
   Position: mm9 chr4:151,502,133-151,505,178 Size: 3,046 Coding Exon Count: 4 

Page IndexSequence and LinksCTDMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2011-03-02

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:151,501,903-151,505,966)mRNA (may differ from genome)Protein (221 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsPubMedStanford SOURCE
UniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from GNF1M Mouse Chip

    
     
      
       
     
    
   
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Absolute

Rinn et. al Sex Gene Expression Data on MOE430A Chip

        
Ratios
        
Absolute

GNF Expression Atlas Data from U74c Mouse Chip

          
Ratios
          
Absolute

Affymetrix All Exon Microarrays

           
Ratios

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -148.60294-0.505 Picture PostScript Text
3' UTR -64.80230-0.282 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF02205 - WH2 motif

ModBase Predicted Comparative 3D Structure on Q9ET47-7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AF239886 - Mus musculus espin mRNA, complete cds.
BC057888 - Mus musculus espin, mRNA (cDNA clone IMAGE:4982096), complete cds.
BC044723 - Mus musculus espin, mRNA (cDNA clone IMAGE:6395900), complete cds.
AK002284 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610007F01 product:espin, full insert sequence.
AK165010 - Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130202O15 product:espin, full insert sequence.
AY587570 - Mus musculus espin isoform 3A mRNA, complete cds, alternatively spliced.
AY587571 - Mus musculus espin isoform 3B mRNA, complete cds, alternatively spliced.
AF540942 - Mus musculus Purkinje cell espin isoform 1 (Espn) mRNA, complete cds; alternatively spliced.
AF540943 - Mus musculus Purkinje cell espin isoform 1+ (Espn) mRNA, complete cds; alternatively spliced.
AF540944 - Mus musculus Purkinje cell espin isoform 2 (Espn) mRNA, complete cds; alternatively spliced.
AF540945 - Mus musculus Purkinje cell espin isoform 2+ (Espn) mRNA, complete cds; alternatively spliced.
AF134857 - Mus musculus espin mRNA, partial cds.
AK146701 - Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920043M05 product:espin, full insert sequence.
AK145160 - Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930006D15 product:espin, full insert sequence.
AK181113 - Mus musculus cDNA, clone:Y0G0116P19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000070034, based on BLAT search.

-  Other Names for This Gene
  Alternate Gene Symbols: AK145160, NM_207691, NP_997574, Q9ET47-7
UCSC ID: uc008vzv.1
RefSeq Accession: NM_207691
Protein: Q9ET47-7, splice isoform of Q9ET47

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK145160.1
exon count: 5CDS single in 3' UTR: no RNA size: 1193
ORF size: 666CDS single in intron: no Alignment % ID: 99.33
txCdsPredict score: 1531.50frame shift in genome: no % Coverage: 99.75
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 275# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.