Mouse Gene Rgs12 (ENSMUST00000030984.13) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus regulator of G-protein signaling 12 (Rgs12), transcript variant 1, mRNA. (from RefSeq NM_173402)
Gencode Transcript: ENSMUST00000030984.13
Gencode Gene: ENSMUSG00000029101.16
Transcript (Including UTRs)
   Position: mm10 chr5:34,949,445-35,033,595 Size: 84,151 Total Exon Count: 17 Strand: +
Coding Region
   Position: mm10 chr5:34,964,875-35,032,451 Size: 67,577 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:34,949,445-35,033,595)mRNA (may differ from genome)Protein (1381 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
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PubMedSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: RGS12_MOUSE
DESCRIPTION: RecName: Full=Regulator of G-protein signaling 12; Short=RGS12;
FUNCTION: Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form.
SUBUNIT: Interacts with GNAI1, GNAI2 and GNAI3; the interactions are GDP-dependent (By similarity).
SUBCELLULAR LOCATION: Nucleus (By similarity).
TISSUE SPECIFICITY: Expressed in brain.
DEVELOPMENTAL STAGE: Expressed in germinal vesicle oocyte, metaphase II oocyte and blastocyst (at protein level). Expressed in oocyte.
DOMAIN: The GoLoco domain is necessary for interaction with GNAI1, GNAI2 and GNAI3 (By similarity).
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Contains 1 GoLoco domain.
SIMILARITY: Contains 1 PDZ (DHR) domain.
SIMILARITY: Contains 1 PID domain.
SIMILARITY: Contains 2 RBD (Ras-binding) domains.
SIMILARITY: Contains 1 RGS domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -62.40182-0.343 Picture PostScript Text
3' UTR -416.801144-0.364 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003109 - GoLoco_motif
IPR001478 - PDZ
IPR011993 - PH_like_dom
IPR006020 - PTyr_interaction_dom
IPR003116 - Raf-like_ras-bd
IPR000342 - Regulat_G_prot_signal
IPR024066 - Regulat_G_prot_signal_dom1
IPR016137 - Regulat_G_prot_signal_superfam

Pfam Domains:
PF00595 - PDZ domain (Also known as DHR or GLGF)
PF00615 - Regulator of G protein signaling domain
PF02188 - GoLoco motif
PF02196 - Raf-like Ras-binding domain
PF16611 - Unstructured region between RBD and GoLoco
PF16612 - C-terminal unstructured region of RGS12
PF16613 - Unstructured region of RGS12

SCOP Domains:
48097 - Regulator of G-protein signaling, RGS
50156 - PDZ domain-like
50729 - PH domain-like
54236 - Ubiquitin-like

ModBase Predicted Comparative 3D Structure on Q8CGE9
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001965 G-protein alpha-subunit binding
GO:0005096 GTPase activator activity
GO:0005515 protein binding
GO:0030695 GTPase regulator activity

Biological Process:
GO:0007165 signal transduction
GO:0038032 termination of G-protein coupled receptor signaling pathway
GO:0043547 positive regulation of GTPase activity
GO:0050790 regulation of catalytic activity

Cellular Component:
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0030054 cell junction
GO:0030425 dendrite
GO:0032991 macromolecular complex
GO:0042995 cell projection
GO:0043025 neuronal cell body
GO:0045202 synapse
GO:0097440 apical dendrite


-  Descriptions from all associated GenBank mRNAs
  AK053804 - Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130309H11 product:G-protein signaling regulator 12 homolog [Rattus norvegicus], full insert sequence.
BC040396 - Mus musculus regulator of G-protein signaling 12, mRNA (cDNA clone MGC:27545 IMAGE:4461061), complete cds.
AK145890 - Mus musculus 11 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530012C04 product:regulator of G-protein signaling 12, full insert sequence.
AK004813 - Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200016K18 product:REGULATOR OF G-PROTEIN SIGNALING 12 (RGS12) homolog [Rattus norvegicus], full insert sequence.
AK144822 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730038E12 product:regulator of G-protein signaling 12, full insert sequence.
AK161129 - Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732458J22 product:regulator of G-protein signaling 12, full insert sequence.
AK014569 - Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632412M04 product:REGULATOR OF G-PROTEIN SIGNALING 12 (RGS12) homolog [Rattus norvegicus], full insert sequence.
AK206195 - Mus musculus cDNA, clone:Y2G0104B01, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000030984, based on BLAT search.

-  Other Names for This Gene
  Alternate Gene Symbols: E9PXX2, NM_173402, Q8CGE9, RGS12_MOUSE, uc008xdg.1, uc008xdg.2, uc008xdg.3, uc008xdg.4
UCSC ID: uc008xdg.4
RefSeq Accession: NM_173402
Protein: Q8CGE9 (aka RGS12_MOUSE)
CCDS: CCDS19222.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.