Mouse Gene Rpl6 (ENSMUST00000031617.12) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus ribosomal protein L6 (Rpl6), mRNA. (from RefSeq NM_011290)
Gencode Transcript: ENSMUST00000031617.12
Gencode Gene: ENSMUSG00000029614.13
Transcript (Including UTRs)
Position: mm10 chr5:121,204,481-121,209,241 Size: 4,761 Total Exon Count: 7 Strand: +
Coding Region
Position: mm10 chr5:121,205,406-121,208,934 Size: 3,529 Coding Exon Count: 6
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: Q3UCH0_MOUSE
DESCRIPTION: RecName: Full=60S ribosomal protein L6;
SIMILARITY: Belongs to the ribosomal protein L6e family.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR005568 - Ribosomal_L6_N
IPR000915 - Ribosomal_L6E
IPR014722 - Transl_SH3-like_sub
Pfam Domains: PF01159 - Ribosomal protein L6e
PF03868 - Ribosomal protein L6, N-terminal domain
SCOP Domains: 50104 - Translation proteins SH3-like domain
ModBase Predicted Comparative 3D Structure on Q3UCH0
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK153208 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830127H10 product:ribosomal protein L6, full insert sequence.AK150540 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830011I22 product:ribosomal protein L6, full insert sequence.AK151344 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830028F14 product:ribosomal protein L6, full insert sequence.AK151759 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830036L08 product:ribosomal protein L6, full insert sequence.AK167439 - Mus musculus 11 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530014E17 product:ribosomal protein L6, full insert sequence.AK151022 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830020H24 product:ribosomal protein L6, full insert sequence.AK153507 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830168L01 product:ribosomal protein L6, full insert sequence.AK135175 - Mus musculus 12 days embryo female ovary cDNA, RIKEN full-length enriched library, clone:6620403F12 product:ribosomal protein L6, full insert sequence.AK148479 - Mus musculus adult pancreas islet cells cDNA, RIKEN full-length enriched library, clone:C820008J02 product:ribosomal protein L6, full insert sequence.AK002248 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610006I04 product:ribosomal protein L6, full insert sequence.AK002648 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610019D07 product:ribosomal protein L6, full insert sequence.AK088472 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430018H24 product:ribosomal protein L6, full insert sequence.BC106121 - Mus musculus ribosomal protein L6, mRNA (cDNA clone MGC:117949 IMAGE:3979296), complete cds.AK010918 - Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:2510006J16 product:ribosomal protein L6, full insert sequence.BC062880 - Mus musculus ribosomal protein L6, mRNA (cDNA clone MGC:86071 IMAGE:5692572), complete cds.X81987 - M.musculus mRNA for TAX responsive element binding protein 107.DQ550952 - Mus musculus piRNA piR-19064, complete sequence.AK219533 - Mus musculus cDNA, clone:Y2G0148M09, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031617, based on BLAT search.AK198216 - Mus musculus cDNA, clone:Y1G0127H08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031617, based on BLAT search.AB349459 - Mus musculus non-coding RNA, oocyte_piRNA275, complete sequence.AK208536 - Mus musculus cDNA, clone:Y2G0111N15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000031617, based on BLAT search.
Biochemical and Signaling Pathways
KEGG - Kyoto Encyclopedia of Genes and Genomes mmu03010 - Ribosome
Other Names for This Gene
Alternate Gene Symbols: mCG_16023, NM_011290, Q3UCH0, Q3UCH0_MOUSE, uc008ziq.1, uc008ziq.2, uc008ziq.3, uc008ziq.4UCSC ID: uc008ziq.4RefSeq Accession: NM_011290
Protein: Q3UCH0
CCDS: CCDS19632.1
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.