Mouse Gene Baiap2l1 (ENSMUST00000055190.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus BAI1-associated protein 2-like 1 (Baiap2l1), mRNA. (from RefSeq NM_025833)
Gencode Transcript: ENSMUST00000055190.7
Gencode Gene: ENSMUSG00000038859.7
Transcript (Including UTRs)
   Position: mm10 chr5:144,264,526-144,358,112 Size: 93,587 Total Exon Count: 14 Strand: -
Coding Region
   Position: mm10 chr5:144,265,957-144,357,841 Size: 91,885 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:144,264,526-144,358,112)mRNA (may differ from genome)Protein (514 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: BI2L1_MOUSE
DESCRIPTION: RecName: Full=Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1; Short=BAI1-associated protein 2-like protein 1; AltName: Full=Insulin receptor tyrosine kinase substrate;
FUNCTION: May function as adapter protein. Involved in the formation of clusters of actin bundles. Plays a role in the reorganization of the actin cytoskeleton in response to bacterial infection (By similarity).
SUBUNIT: Interacts with RAC1. Binds to F-actin. Interacts with FASLG (By similarity).
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton (By similarity). Note=Recruited to actin pedestals that are formed upon infection by bacteria at bacterial attachment sites (By similarity).
TISSUE SPECIFICITY: Detected in bladder, liver, testes, heart, lung, spleen, brain and skeletal muscle (at protein level).
DOMAIN: The IMD domain is predicted to have a helical structure. It may induce actin bundling and filopodia formation (By similarity).
PTM: Phosphorylated on tyrosine in response to insulin (By similarity).
SIMILARITY: Contains 1 IMD (IRSp53/MIM homology) domain.
SIMILARITY: Contains 1 SH3 domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -97.00271-0.358 Picture PostScript Text
3' UTR -437.101431-0.305 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013606 - IRSp53/MIM_homology_IMD
IPR011511 - SH3_2
IPR001452 - SH3_domain

Pfam Domains:
PF00018 - SH3 domain
PF07653 - Variant SH3 domain
PF08397 - IRSp53/MIM homology domain
PF14604 - Variant SH3 domain

SCOP Domains:
103657 - BAR/IMD domain-like
50044 - SH3-domain
69989 - C-terminal domain of PLC-beta

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1SPK - NMR


ModBase Predicted Comparative 3D Structure on Q9DBJ3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0070064 proline-rich region binding
GO:0098641 cadherin binding involved in cell-cell adhesion

Biological Process:
GO:0007009 plasma membrane organization
GO:0008286 insulin receptor signaling pathway
GO:0009617 response to bacterium
GO:0030833 regulation of actin filament polymerization
GO:0030838 positive regulation of actin filament polymerization
GO:0046626 regulation of insulin receptor signaling pathway
GO:0051017 actin filament bundle assembly
GO:0051764 actin crosslink formation
GO:0098609 cell-cell adhesion
GO:2000251 positive regulation of actin cytoskeleton reorganization

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005913 cell-cell adherens junction
GO:0015629 actin cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  BC015459 - Mus musculus BAI1-associated protein 2-like 1, mRNA (cDNA clone MGC:8269 IMAGE:3592632), complete cds.
AK004918 - Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300006M19 product:INSULIN RECEPTOR TYROSINE KINASE SUBSTRATE homolog [Homo sapiens], full insert sequence.
AK008203 - Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010012D17 product:INSULIN RECEPTOR TYROSINE KINASE SUBSTRATE homolog [Homo sapiens], full insert sequence.
AK194331 - Mus musculus cDNA, clone:Y1G0115A04, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000055190, based on BLAT search.
AK162158 - Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420442G03 product:Warning: possibly chimeric clone, full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: BI2L1_MOUSE, Irtks, NM_025833, Q9DBJ3, uc009alq.1, uc009alq.2
UCSC ID: uc009alq.2
RefSeq Accession: NM_025833
Protein: Q9DBJ3 (aka BI2L1_MOUSE)
CCDS: CCDS39378.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.