Mouse Gene Flnc (ENSMUST00000065090.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus filamin C, gamma (Flnc), transcript variant 1, mRNA. (from RefSeq NM_001081185)
Gencode Transcript: ENSMUST00000065090.7
Gencode Gene: ENSMUSG00000068699.12
Transcript (Including UTRs)
   Position: mm10 chr6:29,433,276-29,461,883 Size: 28,608 Total Exon Count: 48 Strand: +
Coding Region
   Position: mm10 chr6:29,433,459-29,461,209 Size: 27,751 Coding Exon Count: 48 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:29,433,276-29,461,883)mRNA (may differ from genome)Protein (2726 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: FLNC_MOUSE
DESCRIPTION: RecName: Full=Filamin-C; Short=FLN-C; AltName: Full=ABP-280-like protein; AltName: Full=ABP-L; AltName: Full=Actin-binding-like protein; AltName: Full=Filamin-2; AltName: Full=Gamma-filamin;
FUNCTION: Muscle-specific filamin, which plays a central role in muscle cells, probably by functioning as a large actin-cross- linking protein. May be involved in reorganizing the actin cytoskeleton in response to signaling events, and may also display structural functions at the Z lines in muscle cells. Critical for normal myogenesis and for maintaining the structural integrity of the muscle fibers.
SUBUNIT: Homodimer (By similarity). Interacts with FLNB, KCND2, INPPL1, ITGB1A, MYOT, MYOZ1 and MYOZ3. Interacts with sarcoglycans SGCD and SGCG. Interacts (via filament repeats 17-18, 20-21 and 24) with USP25 (isoform USP25m only). Interacts with FBLIM1 (By similarity). Interacts with KY. Interacts with IGFN1.
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Membrane; Peripheral membrane protein (By similarity). Cytoplasm, cytoskeleton (By similarity). Cytoplasm, myofibril, sarcomere, Z line (By similarity). Note=A small amount localizes at membranes. In striated muscle cells, it predominantly localizes in myofibrillar Z lines, while a minor fraction localizes with subsarcolemme (By similarity).
DOMAIN: The intradomain insert is specific to FLNC and mediates the targeting to developing and mature Z lines (By similarity).
DOMAIN: During myogenesis, isoform 1 is expressed the first day, then is replaced by isoform 2.
DOMAIN: Comprised of a NH2-terminal actin-binding domain, 24 internally homologous repeats and two hinge regions. Repeat 24 and the second hinge domain are important for dimer formation.
DOMAIN: The filamin 20 repeat mediates interaction with XIRP1 (By similarity).
SIMILARITY: Belongs to the filamin family.
SIMILARITY: Contains 1 actin-binding domain.
SIMILARITY: Contains 2 CH (calponin-homology) domains.
SIMILARITY: Contains 24 filamin repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -47.60183-0.260 Picture PostScript Text
3' UTR -244.50674-0.363 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001589 - Actinin_actin-bd_CS
IPR001715 - CH-domain
IPR003961 - Fibronectin_type3
IPR001298 - Filamin
IPR017868 - Filamin/ABP280_repeat-like
IPR013783 - Ig-like_fold
IPR014756 - Ig_E-set

Pfam Domains:
PF00307 - Calponin homology (CH) domain
PF00630 - Filamin/ABP280 repeat

SCOP Domains:
47576 - Calponin-homology domain, CH-domain
49373 - Invasin/intimin cell-adhesion fragments
81296 - E set domains
141729 - FimD N-terminal domain-like
49785 - Galactose-binding domain-like
49863 - Hyaluronate lyase-like, C-terminal domain
49452 - Starch-binding domain-like
49464 - Carboxypeptidase regulatory domain-like
49478 - Cna protein B-type domain
49493 - HSP40/DnaJ peptide-binding domain
49590 - PHL pollen allergen
52954 - Class II aaRS ABD-related
53067 - Actin-like ATPase domain
55550 - SH2 domain

ModBase Predicted Comparative 3D Structure on Q8VHX6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGDEnsembl   
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0008092 cytoskeletal protein binding
GO:0030506 ankyrin binding
GO:0042802 identical protein binding
GO:0051015 actin filament binding

Biological Process:
GO:0030029 actin filament-based process
GO:0048747 muscle fiber development

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0015629 actin cytoskeleton
GO:0016020 membrane
GO:0016528 sarcoplasm
GO:0030018 Z disc
GO:0042383 sarcolemma


-  Descriptions from all associated GenBank mRNAs
  LF202616 - JP 2014500723-A/10119: Polycomb-Associated Non-Coding RNAs.
AK051985 - Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230030L22 product:weakly similar to CGABP260 ACTIN-BINDING DOMAIN (FRAGMENT) [Gallus gallus], full insert sequence.
BC151097 - Mus musculus filamin C, gamma, mRNA (cDNA clone MGC:184010 IMAGE:9088010), complete cds.
BC158128 - Mus musculus filamin C, gamma, mRNA (cDNA clone MGC:189896 IMAGE:9007396), complete cds.
BC172159 - Mus musculus cDNA clone IMAGE:9054829.
BC156519 - Synthetic construct Mus musculus clone IMAGE:100063147, MGC:191026 filamin C, gamma (Flnc) mRNA, encodes complete protein.
BC172720 - Synthetic construct Mus musculus clone IMAGE:100069528, MGC:199430 filamin C, gamma (Flnc) mRNA, encodes complete protein.
BC060276 - Mus musculus filamin C, gamma, mRNA (cDNA clone IMAGE:6824907), partial cds.
BC052186 - Mus musculus filamin C, gamma, mRNA (cDNA clone IMAGE:6393534), partial cds.
AF353670 - Mus musculus filamin C (Flnc) mRNA, partial cds, alternatively spliced.
AK135523 - Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820442M01 product:Filamin C (Gamma-filamin) (Filamin 2) (FLN-C) (Actin-binding like protein) (ABP-L) (ABP-280-like protein) (Fragment) homolog [Mus musculus], full insert sequence.
AK004264 - Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110055E19 product:Filamin C (Gamma-filamin) (Filamin 2) (FLN-C) (Actin-binding like protein) (ABP-L) (ABP-280-like protein) (Fragment) homolog [Mus musculus], full insert sequence.
AF119148 - Mus musculus strain C3H filamin mRNA, partial cds.
MA438193 - JP 2018138019-A/10119: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04010 - MAPK signaling pathway
mmu04510 - Focal adhesion

Reactome (by CSHL, EBI, and GO)

Protein Q8VHX6 (Reactome details) participates in the following event(s):

R-MMU-430347 MigFilin associates with Filamin and F-actin
R-MMU-446353 Cell-extracellular matrix interactions
R-MMU-446728 Cell junction organization
R-MMU-1500931 Cell-Cell communication

-  Other Names for This Gene
  Alternate Gene Symbols: Abpl, B2RY80, B9EKT2, Fln2, FLNC_MOUSE, NM_001081185, Q6PAI6, Q8VHX6, Q9JJ38, uc009bdn.1, uc009bdn.2
UCSC ID: uc009bdn.2
RefSeq Accession: NM_001081185
Protein: Q8VHX6 (aka FLNC_MOUSE)
CCDS: CCDS39452.1, CCDS80503.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.