Mouse Gene Pex26 (ENSMUST00000088561.9) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus peroxisomal biogenesis factor 26 (Pex26), transcript variant 1, mRNA. (from RefSeq NM_028730)
RefSeq Summary (NM_028730): This gene is a member of the peroxin-26 family. The encoded protein is probably required for protein import into peroxisomes. It may anchor Pex1 and Pex6 to peroxisome membranes. Defects in a similar gene in human are the cause of peroxisome biogenesis disorder complementation group 8 (PBD-CG8). PBD refers to a group of four disorders: Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). Alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, Feb 2015].
Gencode Transcript: ENSMUST00000088561.9
Gencode Gene: ENSMUSG00000067825.11
Transcript (Including UTRs)
   Position: mm10 chr6:121,183,667-121,196,192 Size: 12,526 Total Exon Count: 5 Strand: +
Coding Region
   Position: mm10 chr6:121,184,265-121,193,615 Size: 9,351 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:121,183,667-121,196,192)mRNA (may differ from genome)Protein (305 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: PEX26_MOUSE
DESCRIPTION: RecName: Full=Peroxisome assembly protein 26; AltName: Full=Peroxin-26;
FUNCTION: Probably required for protein import into peroxisomes. Anchors PEX1 and PEX6 to peroxisome membranes, possibly to form heteromeric AAA ATPase complexes required for the import of proteins into peroxisomes. Involved in the import of catalase and proteins containing a PTS2 target sequence, but not in import of proteins with a PTS1 target sequence (By similarity).
SUBUNIT: Interacts directly with PEX6 via its cytoplasmic domain. Interacts indirectly with PEX1, via its interaction with PEX6 (By similarity).
SUBCELLULAR LOCATION: Peroxisome membrane; Single-pass type II membrane protein (By similarity).
SIMILARITY: Belongs to the peroxin-26 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -235.10598-0.393 Picture PostScript Text
3' UTR -957.202577-0.371 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010797 - Pex26

Pfam Domains:
PF07163 - Pex26 protein

SCOP Domains:
48452 - TPR-like
69118 - AhpD-like

ModBase Predicted Comparative 3D Structure on Q8BGI5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008022 protein C-terminus binding
GO:0044877 macromolecular complex binding
GO:0051117 ATPase binding

Biological Process:
GO:0015031 protein transport
GO:0016558 protein import into peroxisome matrix
GO:0045046 protein import into peroxisome membrane

Cellular Component:
GO:0005777 peroxisome
GO:0005778 peroxisomal membrane
GO:0005779 integral component of peroxisomal membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  LF195845 - JP 2014500723-A/3348: Polycomb-Associated Non-Coding RNAs.
AK087637 - Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230029P06 product:similar to KAIA2502 PROTEIN [Homo sapiens], full insert sequence.
AK145961 - Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530018A10 product:similar to Pex26pG255insT [Homo sapiens], full insert sequence.
AK014598 - Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632428M11 product:similar to KAIA2502 PROTEIN [Homo sapiens], full insert sequence.
AK042663 - Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730014D13 product:similar to KAIA2502 PROTEIN [Homo sapiens], full insert sequence.
AK089485 - Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730038L14 product:similar to KAIA2502 PROTEIN [Homo sapiens], full insert sequence.
AK040411 - Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430092G03 product:similar to KAIA2502 PROTEIN [Homo sapiens], full insert sequence.
AK147925 - Mus musculus melanocyte cDNA, RIKEN full-length enriched library, clone:G270102H10 product:4632428M11Rik protein (RIKEN cDNA 4632428M11 gene) (Similar to KAIA2502 protein), full insert sequence.
BC019144 - Mus musculus peroxisomal biogenesis factor 26, mRNA (cDNA clone MGC:29244 IMAGE:5050939), complete cds.
BC058694 - Mus musculus peroxisomal biogenesis factor 26, mRNA (cDNA clone MGC:61341 IMAGE:6811976), complete cds.
AK044186 - Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830097P11 product:similar to KAIA2502 PROTEIN [Homo sapiens], full insert sequence.
LF289168 - JP 2014500723-A/96671: Polycomb-Associated Non-Coding RNAs.
LF289169 - JP 2014500723-A/96672: Polycomb-Associated Non-Coding RNAs.
LF289170 - JP 2014500723-A/96673: Polycomb-Associated Non-Coding RNAs.
LF289171 - JP 2014500723-A/96674: Polycomb-Associated Non-Coding RNAs.
LF289172 - JP 2014500723-A/96675: Polycomb-Associated Non-Coding RNAs.
LF289183 - JP 2014500723-A/96686: Polycomb-Associated Non-Coding RNAs.
AK149594 - Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730048O11 product:hypothetical protein, full insert sequence.
LF289184 - JP 2014500723-A/96687: Polycomb-Associated Non-Coding RNAs.
AK202142 - Mus musculus cDNA, clone:Y1G0140H24, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032197, based on BLAT search.
AB352350 - Mus musculus non-coding RNA, oocyte_piRNA3166, complete sequence.
LF289185 - JP 2014500723-A/96688: Polycomb-Associated Non-Coding RNAs.
MA431422 - JP 2018138019-A/3348: Polycomb-Associated Non-Coding RNAs.
MA524745 - JP 2018138019-A/96671: Polycomb-Associated Non-Coding RNAs.
MA524746 - JP 2018138019-A/96672: Polycomb-Associated Non-Coding RNAs.
MA524747 - JP 2018138019-A/96673: Polycomb-Associated Non-Coding RNAs.
MA524748 - JP 2018138019-A/96674: Polycomb-Associated Non-Coding RNAs.
MA524749 - JP 2018138019-A/96675: Polycomb-Associated Non-Coding RNAs.
MA524760 - JP 2018138019-A/96686: Polycomb-Associated Non-Coding RNAs.
MA524761 - JP 2018138019-A/96687: Polycomb-Associated Non-Coding RNAs.
MA524762 - JP 2018138019-A/96688: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04146 - Peroxisome

Reactome (by CSHL, EBI, and GO)

Protein Q8BGI5 (Reactome details) participates in the following event(s):

R-MMU-9033516 Ub:PEX5L (in PEX2:PEX10:PEX12:Ub:PEX5L:PEX7:PEX13:PEX14) binds PEX1:PEX6:PEX26 and ZFAND6
R-MMU-9033533 Ub:PEX5S,L (in PEX2:PEX10:PEX12:Ub:PEX5S:PEX13:PEX14) binds PEX1:PEX6:PEX26 and ZFAND6
R-MMU-9033241 Peroxisomal protein import
R-MMU-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: NM_028730, PEX26_MOUSE, Q3UGH5, Q8BGI5, Q9D661, uc009dod.1, uc009dod.2
UCSC ID: uc009dod.2
RefSeq Accession: NM_028730
Protein: Q8BGI5 (aka PEX26_MOUSE or PEXQ_MOUSE)
CCDS: CCDS20488.1, CCDS80603.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.