Mouse Gene Cmas (ENSMUST00000032419.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus cytidine monophospho-N-acetylneuraminic acid synthetase (Cmas), mRNA. (from RefSeq NM_009908)
Gencode Transcript: ENSMUST00000032419.8
Gencode Gene: ENSMUSG00000030282.14
Transcript (Including UTRs)
   Position: mm10 chr6:142,756,686-142,775,714 Size: 19,029 Total Exon Count: 8 Strand: +
Coding Region
   Position: mm10 chr6:142,756,773-142,775,340 Size: 18,568 Coding Exon Count: 8 

Page IndexSequence and LinksPrimersCTDRNA StructureOther Species
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:142,756,686-142,775,714)mRNA (may differ from genome)Protein (432 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsPubMed
SOURCEUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -33.6087-0.386 Picture PostScript Text
3' UTR -95.10374-0.254 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsemblEnsembl  
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK155730 - Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730212J11 product:cytidine monophospho-N-acetylneuraminic acid synthetase, full insert sequence.
BC031500 - Mus musculus cytidine monophospho-N-acetylneuraminic acid synthetase, mRNA (cDNA clone MGC:27736 IMAGE:2647633), complete cds.
BC063776 - Mus musculus cytidine monophospho-N-acetylneuraminic acid synthetase, mRNA (cDNA clone MGC:70211 IMAGE:6398450), complete cds.
AJ006215 - Mus musculus mRNA for CMP-N-acetylneuraminic acid synthetase.
AK212741 - Mus musculus cDNA, clone:Y2G0125P12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032419, based on BLAT search.
AK219252 - Mus musculus cDNA, clone:Y2G0147O04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032419, based on BLAT search.
AK087150 - Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030030D16 product:cytidine monophospho-N-acetylneuraminic acid synthetase, full insert sequence.
AK218506 - Mus musculus cDNA, clone:Y2G0145G13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032419, based on BLAT search.
BC004606 - Mus musculus cytidine monophospho-N-acetylneuraminic acid synthetase, mRNA (cDNA clone IMAGE:3585013), partial cds.
AK180488 - Mus musculus cDNA, clone:Y0G0114H23, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032419, based on BLAT search.
AK213220 - Mus musculus cDNA, clone:Y2G0127J23, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000032419, based on BLAT search.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00520 - Amino sugar and nucleotide sugar metabolism
mmu01100 - Metabolic pathways

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0R4J0B4, NM_009908, uc009eps.1, uc009eps.2
UCSC ID: uc009eps.2
RefSeq Accession: NM_009908
CCDS: CCDS20687.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.