The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on Q6ZWN5
Front
Top
Side
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Human
Rat
Zebrafish
D. melanogaster
C. elegans
S. cerevisiae
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
No ortholog
Gene Ontology (GO) Annotations with Structured Vocabulary
AK081889 - Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130085C18 product:SIMILAR TO RIBOSOMAL PROTEIN S9 (UNKNOWN) (PROTEIN FOR MGC:14341) (PROTEIN FOR MGC:2458) (PROTEIN FOR MGC:4138) homolog [Homo sapiens], full insert sequence. AK013903 - Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched library, clone:3010033P07 product:40S RIBOSOMAL PROTEIN S9 (FRAGMENT) homolog [Sus scrofa], full insert sequence. AK151621 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830032E16 product:40S ribosomal protein S9 homolog [Homo sapiens], full insert sequence. AK150988 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830019H17 product:40S ribosomal protein S9 homolog [Homo sapiens], full insert sequence. AK050591 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:C920007P20 product:SIMILAR TO RIBOSOMAL PROTEIN S9 (UNKNOWN) (PROTEIN FOR MGC:14341) (PROTEIN FOR MGC:2458) (PROTEIN FOR MGC:4138) homolog [Homo sapiens], full insert sequence. AK151029 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830020L13 product:40S ribosomal protein S9 homolog [Homo sapiens], full insert sequence. AK150800 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830015I10 product:40S ribosomal protein S9 homolog [Homo sapiens], full insert sequence. BC031746 - Mus musculus ribosomal protein S9, mRNA (cDNA clone MGC:19433 IMAGE:3494314), complete cds. BC012491 - Mus musculus ribosomal protein S9, mRNA (cDNA clone IMAGE:4500773), partial cds.
Biochemical and Signaling Pathways
KEGG - Kyoto Encyclopedia of Genes and Genomes mmu03010 - Ribosome
Reactome (by CSHL, EBI, and GO)
Protein Q6ZWN5 (Reactome details) participates in the following event(s):
R-MMU-72676 eIF3 and eIF1A bind to the 40S subunit R-MMU-157849 Formation of translation initiation complexes containing mRNA that does not circularize R-MMU-72691 Formation of the 43S pre-initiation complex R-MMU-72621 Ribosomal scanning R-MMU-156823 Association of phospho-L13a with GAIT element of Ceruloplasmin mRNA R-MMU-72689 Formation of a pool of free 40S subunits R-MMU-72649 Translation initiation complex formation R-MMU-72695 Formation of the ternary complex, and subsequently, the 43S complex R-MMU-72737 Cap-dependent Translation Initiation R-MMU-6791226 Major pathway of rRNA processing in the nucleolus and cytosol R-MMU-72702 Ribosomal scanning and start codon recognition R-MMU-156827 L13a-mediated translation R-MMU-72662 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S R-MMU-72613 Eukaryotic Translation Initiation R-MMU-8868773 rRNA processing in the nucleus and cytosol R-MMU-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) R-MMU-72766 Translation R-MMU-72312 rRNA processing R-MMU-927802 Nonsense-Mediated Decay (NMD) R-MMU-392499 Metabolism of proteins R-MMU-8953854 Metabolism of RNA
US Server
