Mouse Gene Cd79a (ENSMUST00000003469.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus CD79A antigen (immunoglobulin-associated alpha) (Cd79a), mRNA. (from RefSeq NM_007655)
Gencode Transcript: ENSMUST00000003469.7
Gencode Gene: ENSMUSG00000003379.7
Transcript (Including UTRs)
   Position: mm10 chr7:24,897,381-24,902,197 Size: 4,817 Total Exon Count: 5 Strand: +
Coding Region
   Position: mm10 chr7:24,897,522-24,901,544 Size: 4,023 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:24,897,381-24,902,197)mRNA (may differ from genome)Protein (220 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: CD79A_MOUSE
DESCRIPTION: RecName: Full=B-cell antigen receptor complex-associated protein alpha chain; AltName: Full=Ig-alpha; AltName: Full=MB-1 membrane glycoprotein; AltName: Full=Membrane-bound immunoglobulin-associated protein; AltName: Full=Surface IgM-associated protein; AltName: CD_antigen=CD79a; Flags: Precursor;
FUNCTION: Required in cooperation with CD79B for initiation of the signal transduction cascade activated by binding of antigen to the B-cell antigen receptor complex (BCR) which leads to internalization of the complex, trafficking to late endosomes and antigen presentation. Also required for BCR surface expression and for efficient differentiation of pro- and pre-B-cells. Stimulates SYK autophosphorylation and activation. Binds to BLNK, bringing BLNK into proximity with SYK and allowing SYK to phosphorylate BLNK. Also interacts with and increases activity of some Src- family tyrosine kinases. Represses BCR signaling during development of immature B-cells.
SUBUNIT: Heterodimer of alpha and beta chains; disulfide-linked. Part of the B-cell antigen receptor complex where the alpha/beta chain heterodimer is non-covalently associated with an antigen- specific membrane-bound surface immunoglobulin of two heavy chains and two light chains. Interacts through its phosphorylated ITAM domain with the SH2 domains of SYK which stimulates SYK autophosphorylation and activation. Also interacts, when phosphorylated on Tyr-204, with the SH2 domain of BLNK/SLP65, bringing BLNK into proximity with SYK and allowing SYK to phosphorylate BLNK which is necessary for trafficking of the BCR to late endosomes. Interacts with Src-family tyrosine kinases including FYN and LYN, increasing their activity.
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein. Note=Following antigen binding, the BCR has been shown to translocate from detergent-soluble regions of the cell membrane to lipid rafts although signal transduction through the complex can also occur outside lipid rafts.
TISSUE SPECIFICITY: B-cells.
PTM: Phosphorylated on tyrosine, serine and threonine residues upon B-cell activation. Phosphorylation of tyrosine residues by Src-family kinases, including LYN, is an early and essential feature of the BCR signaling cascade. The phosphorylated tyrosines serve as docking sites for SH2-domain containing kinases, leading to their activation which in turn leads to phosphorylation of downstream targets. Phosphorylation of serine and threonine residues may prevent subsequent tyrosine phosphorylation.
PTM: Arginine methylation in the ITAM domain may interfere with the binding of SYK. It promotes signals leading to B cell differentiation.
DISRUPTION PHENOTYPE: Mice display impaired B-cell development which does not progress pass the progenitor stage.
SIMILARITY: Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
SIMILARITY: Contains 1 ITAM domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -47.90141-0.340 Picture PostScript Text
3' UTR -180.60653-0.277 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR003599 - Ig_sub
IPR003110 - Phos_immunorcpt_sig_ITAM

Pfam Domains:
PF00047 - Immunoglobulin domain
PF02189 - Immunoreceptor tyrosine-based activation motif
PF13927 - Immunoglobulin domain

SCOP Domains:
48726 - Immunoglobulin
63748 - Tudor/PWWP/MBT
49503 - Cupredoxins

ModBase Predicted Comparative 3D Structure on P11911
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
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 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004888 transmembrane signaling receptor activity
GO:0005515 protein binding
GO:0042803 protein homodimerization activity

Biological Process:
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0007166 cell surface receptor signaling pathway
GO:0030183 B cell differentiation
GO:0042100 B cell proliferation
GO:0042113 B cell activation
GO:0050853 B cell receptor signaling pathway
GO:0051289 protein homotetramerization

Cellular Component:
GO:0005771 multivesicular body
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009897 external side of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0019815 B cell receptor complex
GO:0045121 membrane raft


-  Descriptions from all associated GenBank mRNAs
  AK143605 - Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F420015N21 product:CD79A antigen (immunoglobulin-associated alpha), full insert sequence.
X13450 - Murine B lymphocyte lineage restricted mb-1 mRNA.
BC027633 - Mus musculus CD79A antigen (immunoglobulin-associated alpha), mRNA (cDNA clone MGC:41188 IMAGE:1332396), complete cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04662 - B cell receptor signaling pathway
mmu05340 - Primary immunodeficiency

BioCarta from NCI Cancer Genome Anatomy Project
m_bcrmolecule - B Cell Receptor Complex
m_bcrPathway - BCR Signaling Pathway
m_ctcfPathway - CTCF: First Multivalent Nuclear Factor

Reactome (by CSHL, EBI, and GO)

Protein P11911 (Reactome details) participates in the following event(s):

R-MMU-983696 The Immunoglobulin of the BCR binds antigen
R-MMU-983700 SYK binds the activated BCR
R-MMU-5690740 CD22 binds B-cell receptor
R-MMU-983707 SYK autophosphorylates at the activated BCR
R-MMU-983703 p-6Y-SYK phosphorylates BLNK (SLP65)
R-MMU-5690701 SHP1 binds p-CD22
R-MMU-5690702 LYN phosphorylates CD22
R-MMU-1112666 BLNK (SLP-65) Signalosome hydrolyzes phosphatidyinositol bisphosphate forming diacylglycerol and inositol-1,4,5-trisphosphate
R-MMU-983695 Antigen activates B Cell Receptor (BCR) leading to generation of second messengers
R-MMU-983705 Signaling by the B Cell Receptor (BCR)
R-MMU-5690714 CD22 mediated BCR regulation
R-MMU-1280218 Adaptive Immune System
R-MMU-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: CD79A_MOUSE, Iga, Mb-1, NM_007655, P11911, Q6GTY0, uc009fqt.1, uc009fqt.2
UCSC ID: uc009fqt.2
RefSeq Accession: NM_007655
Protein: P11911 (aka CD79A_MOUSE or C79A_MOUSE)
CCDS: CCDS20967.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.