Mouse Gene Timm50 (ENSMUST00000081946.4) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus translocase of inner mitochondrial membrane 50 (Timm50), mRNA. (from RefSeq NM_025616)
Gencode Transcript: ENSMUST00000081946.4
Gencode Gene: ENSMUSG00000003438.17
Transcript (Including UTRs)
   Position: mm10 chr7:28,305,516-28,312,072 Size: 6,557 Total Exon Count: 11 Strand: -
Coding Region
   Position: mm10 chr7:28,305,929-28,312,032 Size: 6,104 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:28,305,516-28,312,072)mRNA (may differ from genome)Protein (353 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: TIM50_MOUSE
DESCRIPTION: RecName: Full=Mitochondrial import inner membrane translocase subunit TIM50; Flags: Precursor;
FUNCTION: Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane (By similarity).
SUBUNIT: Component of the TIM23 complex at least composed of TIMM23, TIMM17 (TIMM17A or TIMM17B) and TIMM50. Interacts directly with TIMM23 (By similarity).
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Single-pass membrane protein (By similarity).
SIMILARITY: Belongs to the TIM50 family.
SIMILARITY: Contains 1 FCP1 homology domain.
SEQUENCE CAUTION: Sequence=AAH10303.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.1040-0.303 Picture PostScript Text
3' UTR -150.00413-0.363 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR023214 - HAD-like_dom
IPR004274 - NIF

Pfam Domains:
PF03031 - NLI interacting factor-like phosphatase

SCOP Domains:
56784 - HAD-like

ModBase Predicted Comparative 3D Structure on Q9D880
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserGenome BrowserNo ortholog
Gene Details    Gene Details
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GenBank EnsemblEnsemblWormBaseSGD
Protein SequenceProtein Sequence Protein SequenceProtein Sequence 
AlignmentAlignment AlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0004722 protein serine/threonine phosphatase activity
GO:0004725 protein tyrosine phosphatase activity
GO:0005134 interleukin-2 receptor binding
GO:0043021 ribonucleoprotein complex binding

Biological Process:
GO:0001836 release of cytochrome c from mitochondria
GO:0006470 protein dephosphorylation
GO:0007006 mitochondrial membrane organization
GO:0015031 protein transport
GO:0030150 protein import into mitochondrial matrix
GO:0035335 peptidyl-tyrosine dephosphorylation

Cellular Component:
GO:0005654 nucleoplasm
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005744 mitochondrial inner membrane presequence translocase complex
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016607 nuclear speck


-  Descriptions from all associated GenBank mRNAs
  BC010303 - Mus musculus translocase of inner mitochondrial membrane 50 homolog (yeast), mRNA (cDNA clone MGC:11857 IMAGE:3597676), complete cds.
BC037056 - Mus musculus cDNA clone IMAGE:4948744, containing frame-shift errors.
AK088074 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430003F01 product:hypothetical NLI interacting factor containing protein, full insert sequence.
AK012977 - Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810403L02 product:RIKEN cDNA 2810403L02 gene, full insert sequence.
AK010832 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410187H06 product:hypothetical NLI interacting factor containing protein, full insert sequence.
AK167473 - Mus musculus 15 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530016F18 product:Hypothetical NLI interacting factor containing protein, full insert sequence.
AK008340 - Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010107H04 product:hypothetical NLI interacting factor containing protein, full insert sequence.
AK008382 - Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010110K05 product:hypothetical NLI interacting factor containing protein, full insert sequence.
AY551342 - Mus musculus translocase of inner mitochondrial membrane 50-like protein mRNA, complete cds; nuclear gene for mitochondrial product.
AK188380 - Mus musculus cDNA, clone:Y0G0144P11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.
AK213347 - Mus musculus cDNA, clone:Y2G0128B02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.
AK186056 - Mus musculus cDNA, clone:Y0G0136C02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.
AK212208 - Mus musculus cDNA, clone:Y2G0124D12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.
AK211593 - Mus musculus cDNA, clone:Y2G0122E04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.
AK199954 - Mus musculus cDNA, clone:Y1G0132O05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.
BC025844 - Mus musculus translocase of inner mitochondrial membrane 50 homolog (yeast), mRNA (cDNA clone IMAGE:5006445), partial cds.
AK179970 - Mus musculus cDNA, clone:Y0G0112G17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.
AK187841 - Mus musculus cDNA, clone:Y0G0143D14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.
AK186280 - Mus musculus cDNA, clone:Y0G0136N05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.
AK219400 - Mus musculus cDNA, clone:Y2G0148F16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.
AK178698 - Mus musculus cDNA, clone:Y0G0107J21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066918, based on BLAT search.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_025616, Q8R3A7, Q91Z17, Q9D880, Tim50, TIM50_MOUSE, uc009fyg.1, uc009fyg.2
UCSC ID: uc009fyg.2
RefSeq Accession: NM_025616
Protein: Q9D880 (aka TIM50_MOUSE)
CCDS: CCDS21039.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.