Mouse Gene Acsm1 (ENSMUST00000047929.12) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus acyl-CoA synthetase medium-chain family member 1 (Acsm1), mRNA. (from RefSeq NM_054094)
Gencode Transcript: ENSMUST00000047929.12
Gencode Gene: ENSMUSG00000033533.14
Transcript (Including UTRs)
   Position: mm10 chr7:119,617,781-119,662,515 Size: 44,735 Total Exon Count: 14 Strand: +
Coding Region
   Position: mm10 chr7:119,622,510-119,662,283 Size: 39,774 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:119,617,781-119,662,515)mRNA (may differ from genome)Protein (573 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: ACSM1_MOUSE
DESCRIPTION: RecName: Full=Acyl-coenzyme A synthetase ACSM1, mitochondrial; EC=6.2.1.2; AltName: Full=Acyl-CoA synthetase medium-chain family member 1; AltName: Full=Butyrate--CoA ligase 1; AltName: Full=Butyryl-coenzyme A synthetase 1; AltName: Full=Lipoate-activating enzyme; AltName: Full=Middle-chain acyl-CoA synthetase 1; Flags: Precursor;
FUNCTION: Functions as GTP-dependent lipoate-activating enzyme that generates the substrate for lipoyltransferase (By similarity). Has medium-chain fatty acid:CoA ligase activity with broad substrate specificity (in vitro). Acts on acids from C(4) to C(11) and on the corresponding 3-hydroxy- and 2,3- or 3,4- unsaturated acids (in vitro).
CATALYTIC ACTIVITY: ATP + a carboxylate + CoA = AMP + diphosphate + an acyl-CoA.
CATALYTIC ACTIVITY: GTP + lipoate = diphosphate + lipoyl-GMP.
COFACTOR: Magnesium (By similarity).
SUBUNIT: Monomer (By similarity).
SUBCELLULAR LOCATION: Mitochondrion matrix.
TISSUE SPECIFICITY: Highly expressed in liver and kidney.
SIMILARITY: Belongs to the ATP-dependent AMP-binding enzyme family.

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -49.60129-0.384 Picture PostScript Text
3' UTR -69.50232-0.300 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020845 - AMP-binding_CS
IPR000873 - AMP-dep_Synth/Lig
IPR025110 - DUF4009

Pfam Domains:
PF00501 - AMP-binding enzyme
PF13193 - AMP-binding enzyme C-terminal domain

SCOP Domains:
50044 - SH3-domain
56801 - Acetyl-CoA synthetase-like

ModBase Predicted Comparative 3D Structure on Q91VA0
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0003996 acyl-CoA ligase activity
GO:0004321 fatty-acyl-CoA synthase activity
GO:0005524 ATP binding
GO:0005525 GTP binding
GO:0015645 fatty acid ligase activity
GO:0016874 ligase activity
GO:0046872 metal ion binding
GO:0047760 butyrate-CoA ligase activity

Biological Process:
GO:0006629 lipid metabolic process
GO:0006631 fatty acid metabolic process
GO:0006633 fatty acid biosynthetic process
GO:0006637 acyl-CoA metabolic process
GO:0008152 metabolic process

Cellular Component:
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix


-  Descriptions from all associated GenBank mRNAs
  AK149586 - Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730047E18 product:butyryl Coenzyme A synthetase 1, full insert sequence.
AK149550 - Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730036G06 product:butyryl Coenzyme A synthetase 1, full insert sequence.
BC016414 - Mus musculus acyl-CoA synthetase medium-chain family member 1, mRNA (cDNA clone MGC:25954 IMAGE:4238964), complete cds.
AB059428 - Mus musculus MACS mRNA for medium-chain acyl-CoA synthetase, complete cds.
BC022149 - Mus musculus acyl-CoA synthetase medium-chain family member 1, mRNA (cDNA clone MGC:37916 IMAGE:5102652), complete cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00650 - Butanoate metabolism
mmu01100 - Metabolic pathways

BioCyc Knowledge Library
FAO-PWY - fatty acid β-oxidation I
PWY-5136 - fatty acid β-oxidation II (core pathway)
PWY-5143 - fatty acid activation

Reactome (by CSHL, EBI, and GO)

Protein Q91VA0 (Reactome details) participates in the following event(s):

R-MMU-159443 benzoate + Coenzyme A + ATP => benzoyl-CoA + AMP + pyrophosphate
R-MMU-177157 phenylacetate + Coenzyme A + ATP => phenylacetyl-CoA + AMP + pyrophosphate
R-MMU-177135 Conjugation of benzoate with glycine
R-MMU-177162 Conjugation of phenylacetate with glutamine
R-MMU-159424 Conjugation of carboxylic acids
R-MMU-156587 Amino Acid conjugation
R-MMU-156580 Phase II - Conjugation of compounds
R-MMU-211859 Biological oxidations
R-MMU-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ACSM1_MOUSE, Bucs1, Lae, Macs1, NM_054094, Q3UED4, Q91VA0, uc009jlm.1, uc009jlm.2, uc009jlm.3
UCSC ID: uc009jlm.3
RefSeq Accession: NM_054094
Protein: Q91VA0 (aka ACSM1_MOUSE)
CCDS: CCDS21783.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.