Mouse Gene Ndufab1 (ENSMUST00000033157.9) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus NADH:ubiquinone oxidoreductase subunit AB1 (Ndufab1), transcript variant 1, mRNA. (from RefSeq NM_028177)
Gencode Transcript: ENSMUST00000033157.9
Gencode Gene: ENSMUSG00000030869.11
Transcript (Including UTRs)
   Position: mm10 chr7:122,085,403-122,101,886 Size: 16,484 Total Exon Count: 5 Strand: -
Coding Region
   Position: mm10 chr7:122,091,594-122,101,822 Size: 10,229 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:122,085,403-122,101,886)mRNA (may differ from genome)Protein (156 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: ACPM_MOUSE
DESCRIPTION: RecName: Full=Acyl carrier protein, mitochondrial; Short=ACP; AltName: Full=CI-SDAP; AltName: Full=NADH-ubiquinone oxidoreductase 9.6 kDa subunit; Flags: Precursor;
FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis in mitochondria. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain (By similarity).
SUBUNIT: Mammalian complex I is composed of 45 different subunits.
SUBCELLULAR LOCATION: Mitochondrion (By similarity).
SIMILARITY: Contains 1 acyl carrier domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -30.8064-0.481 Picture PostScript Text
3' UTR -856.502944-0.291 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003231 - Acyl_carrier
IPR009081 - Acyl_carrier_prot-like
IPR006162 - PPantetheine_attach_site

Pfam Domains:
PF00550 - Phosphopantetheine attachment site

SCOP Domains:
47336 - ACP-like

ModBase Predicted Comparative 3D Structure on Q9CR21
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000035 acyl binding
GO:0000036 ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process
GO:0031177 phosphopantetheine binding

Biological Process:
GO:0006629 lipid metabolic process
GO:0006631 fatty acid metabolic process
GO:0006633 fatty acid biosynthetic process
GO:0009245 lipid A biosynthetic process
GO:0009249 protein lipoylation
GO:0032981 mitochondrial respiratory chain complex I assembly
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005654 nucleoplasm
GO:0005739 mitochondrion
GO:0005747 mitochondrial respiratory chain complex I
GO:0005829 cytosol
GO:0070469 respiratory chain


-  Descriptions from all associated GenBank mRNAs
  BC117985 - Mus musculus cDNA clone IMAGE:40101938.
AK008788 - Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210401F17 product:ACYL CARRIER PROTEIN (ACP) homolog [Mus musculus], full insert sequence.
AK011302 - Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610003B19 product:ACYL CARRIER PROTEIN (ACP) [Mus musculus], full insert sequence.
AK018688 - Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130423F15 product:ACYL CARRIER PROTEIN (ACP) homolog [Mus musculus], full insert sequence.
AK003696 - Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110014G16 product:ACYL CARRIER PROTEIN (ACP) [Mus musculus], full insert sequence.
BC092379 - Mus musculus NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, mRNA (cDNA clone MGC:106626 IMAGE:6815043), complete cds.
AK089103 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430039I23 product:ACYL CARRIER PROTEIN (ACP), full insert sequence.
AK018717 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610007J10 product:ACYL CARRIER PROTEIN (ACP) homolog [Mus musculus], full insert sequence.
AK010307 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2400010C15 product:ACYL CARRIER PROTEIN (ACP) homolog [Mus musculus], full insert sequence.
AK151719 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830035F02 product:NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, full insert sequence.
AK152995 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830099L13 product:NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, full insert sequence.
AK215636 - Mus musculus cDNA, clone:Y2G0135K22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033157, based on BLAT search.
AK167447 - Mus musculus 14 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I530014H10 product:NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, full insert sequence.
BC060951 - Mus musculus NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, mRNA (cDNA clone MGC:74039 IMAGE:6774795), complete cds.
AK009698 - Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310039H15 product:ACYL CARRIER PROTEIN (ACP), full insert sequence.
AK208366 - Mus musculus cDNA, clone:Y2G0110O18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033157, based on BLAT search.
AK208913 - Mus musculus cDNA, clone:Y2G0113D12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033157, based on BLAT search.
AK209844 - Mus musculus cDNA, clone:Y2G0116H17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033157, based on BLAT search.
AK211969 - Mus musculus cDNA, clone:Y2G0123H05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033157, based on BLAT search.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00190 - Oxidative phosphorylation
mmu01100 - Metabolic pathways
mmu05010 - Alzheimer's disease
mmu05012 - Parkinson's disease
mmu05016 - Huntington's disease

BioCyc Knowledge Library
PWY-3781 - aerobic respiration -- electron donor II
PWY0-1334 - NADH to cytochrome bd oxidase electron transfer
PWY0-1335 - NADH to cytochrome bo oxidase electron transfer

Reactome (by CSHL, EBI, and GO)

Protein Q9CR21 (Reactome details) participates in the following event(s):

R-MMU-6793590 LIPT2 transfers octanoyl group to GCSH
R-MMU-8933547 MCAT transfers Mal from Mal-CoA to NDUFAB1
R-MMU-6799178 Intermediate 1 binds HP subcomplex to form Intermediate 2
R-MMU-6799191 Intermediate 2 binds MT-ND1:NDUFAF5:NDUFAF6 to form a 315kDa subcomplex
R-MMU-6799202 The 315kDa subcomplex binds the 370kDa subcomplex to form the 550kDa complex
R-MMU-6799197 ND4, ND5 bind the 550kDa complex to form the 815kDa complex
R-MMU-6799179 Peripheral arm subunits bind the 815kDa complex to form a 980kDa complex
R-MMU-6799196 The MCIA complex, NDUFAF2-7 all dissociate from the 980kDa complex, resulting in Complex I
R-MMU-163217 Complex I oxidises NADH to NAD+, reduces CoQ to QH2
R-MMU-389661 Glyoxylate metabolism and glycine degradation
R-MMU-77289 Mitochondrial Fatty Acid Beta-Oxidation
R-MMU-6799198 Complex I biogenesis
R-MMU-71291 Metabolism of nitrogenous molecules
R-MMU-8978868 Fatty acid metabolism
R-MMU-611105 Respiratory electron transport
R-MMU-1430728 Metabolism
R-MMU-556833 Metabolism of lipids
R-MMU-163200 Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
R-MMU-1428517 The citric acid (TCA) cycle and respiratory electron transport

-  Other Names for This Gene
  Alternate Gene Symbols: ACPM_MOUSE, NM_028177, Q9CR21, Q9D726, Q9D7V5, uc009joh.1, uc009joh.2
UCSC ID: uc009joh.2
RefSeq Accession: NM_028177
Protein: Q9CR21 (aka ACPM_MOUSE)
CCDS: CCDS21809.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.