Mouse Gene Fgf4 (ENSMUST00000060336.4) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus fibroblast growth factor 4 (Fgf4), mRNA. (from RefSeq NM_010202)
Gencode Transcript: ENSMUST00000060336.4
Gencode Gene: ENSMUSG00000050917.5
Transcript (Including UTRs)
   Position: mm10 chr7:144,861,386-144,865,243 Size: 3,858 Total Exon Count: 3 Strand: +
Coding Region
   Position: mm10 chr7:144,861,505-144,862,941 Size: 1,437 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:144,861,386-144,865,243)mRNA (may differ from genome)Protein (202 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: FGF4_MOUSE
DESCRIPTION: RecName: Full=Fibroblast growth factor 4; Short=FGF-4; AltName: Full=Heparin-binding growth factor 4; Short=HBGF-4; AltName: Full=K-fibroblast growth factor; Flags: Precursor;
FUNCTION: Plays an important role in the regulation of embryonic development, cell proliferation, and cell differentiation. Is essential for survival of the postimplantation mouse embryo. Required for normal limb and cardiac valve development during embryogenesis.
SUBUNIT: Interacts with FGFR1, FGFR2, FGFR3 and FGFR4. Affinity between fibroblast growth factors (FGFs) and their receptors is increased by heparan sulfate glycosaminoglycans that function as coreceptors (By similarity).
SUBCELLULAR LOCATION: Secreted (Potential).
TISSUE SPECIFICITY: Expressed in the blastocyst inner cell mass and later in distinct embryonic tissues.
SIMILARITY: Belongs to the heparin-binding growth factors family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -44.00119-0.370 Picture PostScript Text
3' UTR -724.802302-0.315 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008996 - Cytokine_IL1-like
IPR002209 - GF_heparin-bd
IPR002348 - IL1_HBGF

Pfam Domains:
PF00167 - Fibroblast growth factor

SCOP Domains:
50353 - Cytokine
50405 - Actin-crosslinking proteins

ModBase Predicted Comparative 3D Structure on P11403
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005104 fibroblast growth factor receptor binding
GO:0005515 protein binding
GO:0008083 growth factor activity

Biological Process:
GO:0001502 cartilage condensation
GO:0001934 positive regulation of protein phosphorylation
GO:0007275 multicellular organism development
GO:0008284 positive regulation of cell proliferation
GO:0008543 fibroblast growth factor receptor signaling pathway
GO:0010463 mesenchymal cell proliferation
GO:0010468 regulation of gene expression
GO:0010469 regulation of receptor activity
GO:0010628 positive regulation of gene expression
GO:0019827 stem cell population maintenance
GO:0030154 cell differentiation
GO:0030326 embryonic limb morphogenesis
GO:0035116 embryonic hindlimb morphogenesis
GO:0042475 odontogenesis of dentin-containing tooth
GO:0043066 negative regulation of apoptotic process
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0051781 positive regulation of cell division
GO:0060363 cranial suture morphogenesis
GO:0060561 apoptotic process involved in morphogenesis
GO:0060591 chondroblast differentiation
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:1990830 cellular response to leukemia inhibitory factor
GO:2000544 regulation of endothelial cell chemotaxis to fibroblast growth factor

Cellular Component:
GO:0005576 extracellular region


-  Descriptions from all associated GenBank mRNAs
  AK082814 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330026I20 product:fibroblast growth factor 4, full insert sequence.
BC104312 - Mus musculus fibroblast growth factor 4, mRNA (cDNA clone MGC:129266 IMAGE:40044462), complete cds.
BC104313 - Mus musculus fibroblast growth factor 4, mRNA (cDNA clone MGC:129267 IMAGE:40044466), complete cds.
M30642 - Mouse K-fibroblast growth factor (Fgfk) mRNA, complete cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04010 - MAPK signaling pathway
mmu04810 - Regulation of actin cytoskeleton
mmu05200 - Pathways in cancer
mmu05218 - Melanoma

Reactome (by CSHL, EBI, and GO)

Protein P11403 (Reactome details) participates in the following event(s):

R-MMU-190256 FGFR1c binds to FGF
R-MMU-190261 FGFR3c binds to FGF
R-MMU-190265 FGFR4 binds to FGF
R-MMU-5654511 FGFRL1 dimer binds FGFs
R-MMU-190429 Autocatalytic phosphorylation of FGFR1c
R-MMU-190388 Autocatalytic phosphorylation of FGFR3c
R-MMU-190326 Autocatalytic phosphorylation of FGFR4
R-MMU-5654167 Activated FGFR1 binds PLCG1
R-MMU-5654569 Activated FGFR1 binds FRS2
R-MMU-5654571 Activated FGFR1 binds FRS3
R-MMU-5654573 Activated FGFR1 binds SHC1
R-MMU-5656064 Activated FGFR1 binds FLRT1,2,3
R-MMU-5654165 p-4Y-PLCG1 dissociates from activated FGFR1
R-MMU-190413 Autocatalytic phosphorylation of FGFR2c
R-MMU-5654224 Activated FGFR3 binds PLCG1
R-MMU-5654409 Activated FGFR3 binds FRS2
R-MMU-5654623 Activated FGFR3 binds FRS3
R-MMU-5654625 Activated FGFR3 binds SHC1
R-MMU-5654148 p-4Y-PLCG1 dissociates from activated FGFR3
R-MMU-5654163 Activated FGFR4 binds PLCG1
R-MMU-5654422 Activated FGFR4 binds FRS2
R-MMU-5654425 Activated FGFR4 binds SHC1
R-MMU-5654651 Activated FGFR4 binds FRS3
R-MMU-5654169 p-4Y-PLCG1 dissociates from activated FGFR4
R-MMU-5654592 Activated FGFR1:p-FRS2 binds GRB2:GAB1:PIK3R1
R-MMU-5654575 Activated FGFR1 phosphorylates FRS2
R-MMU-5654149 Activated FGFR1 phosphorylates PLCG1
R-MMU-5654578 Activated FGFR1 phosphorylates FRS3
R-MMU-5654560 Activated ERK1/2 threonine-phosphorylates FGFR1-associated FRS2.
R-MMU-5654582 Activated FGFR1 phosphorylates SHC1
R-MMU-5654597 Activated FGFR1:p-SHC1 binds GRB2:SOS1
R-MMU-5654159 Activated FGFR2 binds PLCG1
R-MMU-5654399 Activated FGFR2 binds FRS2
R-MMU-5654404 Activated FGFR2 binds SHC1
R-MMU-5654603 Activated FGFR2 binds FRS3
R-MMU-5654157 p-4Y-PLCG1 dissociates from activated FGFR2
R-MMU-5654637 Activated FGFR3:p-FRS2 binds GRB2:GAB1:PIK3R1
R-MMU-5654408 Activated FGFR3 phosphorylates FRS2
R-MMU-5654222 Activated FGFR3 phosphorylates PLCG1
R-MMU-5654565 Activated ERK1/2 threonine-phosphorylates FGFR3-associated FRS2.
R-MMU-5654628 Activated FGFR3 phosphorylates FRS3
R-MMU-5654634 Activated FGFR3 phosphorylates SHC1
R-MMU-5654646 Activated FGFR3:p-SHC1 binds GRB2:SOS1
R-MMU-5654659 Activated FGFR4:p-FRS2 binds GRB2:GAB1:PIK3R1
R-MMU-5654418 Activated FGFR4 phosphorylates FRS2
R-MMU-5654151 Activated FGFR4 phosphorylates PLCG1
R-MMU-5654566 Activated ERK1/2 threonine-phosphorylates FGFR4-associated FRS2.
R-MMU-5654423 Activated FGFR4:p-SHC1 binds GRB2:SOS1
R-MMU-5654428 Activated FGFR4 phosphorylates SHC1
R-MMU-5654653 Activated FGFR4 phosphorylates FRS3
R-MMU-5654591 Activated FGFR1:p-FRS2:GRB2:GAB1:PI3KR1 binds PIK3CA
R-MMU-5654594 Activated FGFR1:p-FRS2:p-PPTN11 binds GRB2:GAB1:PI3KR1
R-MMU-5654673 p-CBL:GRB2 binds p-FRS2:activated FGFR1
R-MMU-5654584 Activated FGFR1:p-FRS bind to PPTN11
R-MMU-5654586 Activated FGFR1:p-FRS binds GRB2:SOS1
R-MMU-5654612 Activated FGFR2:p-FRS2 binds GRB2:GAB1:PIK3R1
R-MMU-5654397 Activated FGFR2 phosphorylates FRS2
R-MMU-5654147 Activated FGFR2 phosphorylates PLCG1
R-MMU-5654562 Activated ERK1/2 threonine-phosphorylates FGFR2-associated FRS2
R-MMU-5654406 Activated FGFR2:p-SHC1 binds GRB2:SOS1
R-MMU-5654407 Activated FGFR2 phosphorylates SHC1
R-MMU-5654605 Activated FGFR2 phosphorylates FRS3
R-MMU-5654640 Activated FGFR3:p-FRS2:GRB2:GAB1:PI3KR1 binds PIK3CA
R-MMU-5654641 Activated FGFR3:p-FRS2:p-PPTN11 binds GRB2:GAB1:PI3KR1
R-MMU-5654730 p-CBL:GRB2 binds p-FRS2:activated FGFR3
R-MMU-5654416 Activated FGFR3:pFRS binds GRB2:SOS1
R-MMU-5654633 Activated FGFR3:p-FRS bind to PPTN11
R-MMU-5654662 Activated FGFR4:p-FRS2:GRB2:GAB1:PI3KR1 binds PIK3CA
R-MMU-5654667 Activated FGFR4:p-FRS2:p-PPTN11 binds GRB2:GAB1:PI3KR1
R-MMU-5654734 p-CBL:GRB2 binds p-FRS2:activated FGFR4
R-MMU-5654658 Activated FGFR4:p-FRS bind to PPTN11
R-MMU-5654664 Activated FGFR4:p-FRS binds GRB2:SOS1
R-MMU-5654596 Activated FGFR1:p-FRS2:p-PPTN11:GRB2:GAB1:PIK3R1 binds PIK3CA
R-MMU-5654672 CBL ubiquitinates FRS2 and FGFR1
R-MMU-5654587 Activated FGFR1:p-FRS phosphorylates PPTN11
R-MMU-5654600 Activated FGFR1:p-SHC1:GRB2:SOS1 activates RAS nucleotide exchange
R-MMU-5654614 Activated FGFR2:p-FRS2:GRB2:GAB1:PI3KR1 binds PIK3CA
R-MMU-5654620 Activated FGFR2:p-FRS2:p-PPTN11 binds GRB2:GAB1:PI3KR1
R-MMU-5654729 p-CBL:GRB2 binds p-FRS2:activated FGFR2
R-MMU-5654608 Activated FGFR2:p-FRS bind to PPTN11
R-MMU-5654615 Activated FGFR2:pFRS binds GRB2:SOS1
R-MMU-5654643 Activated FGFR3:p-FRS2:p-PPTN11:GRB2:GAB1:PIK3R1 binds PIK3CA
R-MMU-5654679 CBL ubiquitinates FRS2 and FGFR3
R-MMU-5654631 Activated FGFR3 phosphorylates PPTN11
R-MMU-5654647 Activated FGFR3:p-SHC1:GRB2:SOS1 activates RAS nucleotide exchange
R-MMU-5654669 Activated FGFR4:p-FRS2:p-PPTN11:GRB2:GAB1:PIK3R1binds PIK3CA
R-MMU-5654684 CBL ubiquitinates FRS2 and FGFR4
R-MMU-5654655 Activated FGFR4 phosphorylates PPTN11
R-MMU-5654426 Activated FGFR4:p-SHC1:GRB2:SOS1 activates RAS nucleotide exchange
R-MMU-5654690 FGFR1-associated PI3K phosphorylates PIP2 to PIP3
R-MMU-5654392 Activated FGFR1:p-FRS:GRB2:SOS1 activates RAS nucleotide exchange
R-MMU-5672965 RAS GEFs promote RAS nucleotide exchange
R-MMU-5654622 Activated FGFR2:p-FRS2:p-PPTN11:GRB2:GAB1:PIK3R1 binds PIK3CA
R-MMU-5654677 CBL ubiquitinates FRS2 and FGFR2
R-MMU-5654607 Activated FGFR2 phosphorylates PPTN11
R-MMU-5654402 Activated FGFR2:p-SHC1:GRB2:SOS1 activates RAS nucleotide exchange
R-MMU-5654705 FGFR3-associated PI3K phosphorylates PIP2 to PIP3
R-MMU-5654413 Activated FGFR3:p-FRS2:GRB2:SOS1 activates RAS nucleotide exchange
R-MMU-5654717 FGFR4-associated PI3K phosphorylates PIP2 to PIP3
R-MMU-5654663 Activated FGFR4:p-FRS2:GRB2:SOS1 activates RAS nucleotide exchange
R-MMU-2316434 PI3K phosphorylates PIP2 to PIP3
R-MMU-5654692 FGFR1- and PTPN11- associated PI3K phosphorylates PIP2 to PIP3
R-MMU-5654701 FGFR2-associated PI3K phosphorylates PIP2 to PIP3
R-MMU-5654618 Activated FGFR2:p-FRS2:GRB2:SOS1 activates RAS nucleotide exchange
R-MMU-5654709 FGFR3- and PTPN11-associated PI3K phosphorylates PIP2 to PIP3
R-MMU-5654714 FGFR4- and PTPN11-associated PI3K phosphorylates PIP2 to PIP3
R-MMU-109699 PI3K-containing complexes phosphorylate PIP2 to PIP3
R-MMU-5654697 FGFR2- and PTPN11- associated PI3K phosphorylates PIP2 to PIP3
R-MMU-190373 FGFR1c ligand binding and activation
R-MMU-190375 FGFR2c ligand binding and activation
R-MMU-190372 FGFR3c ligand binding and activation
R-MMU-190322 FGFR4 ligand binding and activation
R-MMU-5658623 FGFRL1 modulation of FGFR1 signaling
R-MMU-190242 FGFR1 ligand binding and activation
R-MMU-190241 FGFR2 ligand binding and activation
R-MMU-190239 FGFR3 ligand binding and activation
R-MMU-5654743 Signaling by FGFR4
R-MMU-5654736 Signaling by FGFR1
R-MMU-5654219 Phospholipase C-mediated cascade: FGFR1
R-MMU-5654693 FRS-mediated FGFR1 signaling
R-MMU-5654688 SHC-mediated cascade:FGFR1
R-MMU-5654687 Downstream signaling of activated FGFR1
R-MMU-5654738 Signaling by FGFR2
R-MMU-5654227 Phospholipase C-mediated cascade; FGFR3
R-MMU-5654706 FRS-mediated FGFR3 signaling
R-MMU-5654704 SHC-mediated cascade:FGFR3
R-MMU-5654741 Signaling by FGFR3
R-MMU-5654228 Phospholipase C-mediated cascade; FGFR4
R-MMU-5654712 FRS-mediated FGFR4 signaling
R-MMU-5654719 SHC-mediated cascade:FGFR4
R-MMU-190236 Signaling by FGFR
R-MMU-5654689 PI-3K cascade:FGFR1
R-MMU-5654726 Negative regulation of FGFR1 signaling
R-MMU-5654221 Phospholipase C-mediated cascade; FGFR2
R-MMU-5654700 FRS-mediated FGFR2 signaling
R-MMU-5654699 SHC-mediated cascade:FGFR2
R-MMU-5654710 PI-3K cascade:FGFR3
R-MMU-5654732 Negative regulation of FGFR3 signaling
R-MMU-5654708 Downstream signaling of activated FGFR3
R-MMU-5654720 PI-3K cascade:FGFR4
R-MMU-5654733 Negative regulation of FGFR4 signaling
R-MMU-5654716 Downstream signaling of activated FGFR4
R-MMU-9006934 Signaling by Receptor Tyrosine Kinases
R-MMU-5654695 PI-3K cascade:FGFR2
R-MMU-5654727 Negative regulation of FGFR2 signaling
R-MMU-5654696 Downstream signaling of activated FGFR2
R-MMU-162582 Signal Transduction
R-MMU-5673001 RAF/MAP kinase cascade
R-MMU-1257604 PIP3 activates AKT signaling
R-MMU-6811558 PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling
R-MMU-5684996 MAPK1/MAPK3 signaling
R-MMU-109704 PI3K Cascade
R-MMU-9006925 Intracellular signaling by second messengers
R-MMU-199418 Negative regulation of the PI3K/AKT network
R-MMU-5683057 MAPK family signaling cascades
R-MMU-112399 IRS-mediated signalling
R-MMU-74751 Insulin receptor signalling cascade
R-MMU-2428928 IRS-related events triggered by IGF1R
R-MMU-74752 Signaling by Insulin receptor
R-MMU-2428924 IGF1R signaling cascade
R-MMU-2404192 Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R)

-  Other Names for This Gene
  Alternate Gene Symbols: Fgf-4, FGF4_MOUSE, Kfgf, NM_010202, P11403, P15657, Q542N0, uc009kqq.1
UCSC ID: uc009kqq.1
RefSeq Accession: NM_010202
Protein: P11403 (aka FGF4_MOUSE)
CCDS: CCDS22052.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.