Mouse Gene Ido2 (ENSMUST00000121992.1) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus indoleamine 2,3-dioxygenase 2 (Ido2), mRNA. (from RefSeq NM_145949)
Gencode Transcript: ENSMUST00000121992.1
Gencode Gene: ENSMUSG00000031549.16
Transcript (Including UTRs)
   Position: mm10 chr8:24,532,454-24,576,333 Size: 43,880 Total Exon Count: 10 Strand: -
Coding Region
   Position: mm10 chr8:24,533,603-24,576,248 Size: 42,646 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:24,532,454-24,576,333)mRNA (may differ from genome)Protein (405 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: I23O2_MOUSE
DESCRIPTION: RecName: Full=Indoleamine 2,3-dioxygenase 2; Short=IDO-2; EC=1.13.11.-; AltName: Full=Indoleamine 2,3-dioxygenase-like protein 1; AltName: Full=Indoleamine-pyrrole 2,3-dioxygenase-like protein 1;
FUNCTION: Catalyzes the first and rate-limiting step in the kynurenine pathway of tryptophan catabolism.
CATALYTIC ACTIVITY: L-tryptophan + O(2) = N-formyl-L-kynurenine.
COFACTOR: Binds 1 heme group per subunit (By similarity).
ENZYME REGULATION: Activity is inhibited by D-1MT (1-methyl-D- tryptophan) and MTH-trp (methylthiohydantoin-DL-tryptophan) but not L-1MT (1-methyl-L-tryptophan) (By similarity).
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=38.85 mM for L-tryptophan; Note=Do not accept D-tryptophan as substrate;
PATHWAY: Amino-acid degradation; L-tryptophan degradation via kynurenine pathway; L-kynurenine from L-tryptophan: step 1/2.
TISSUE SPECIFICITY: Highest in kidney, followed by epididymis and liver (at protein level). Detected in the tails of the spermatozoa in the testis and in the kidney tubules (at protein level).
SIMILARITY: Belongs to the indoleamine 2,3-dioxygenase family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -16.9085-0.199 Picture PostScript Text
3' UTR -289.661149-0.252 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000898 - Indolamine_dOase

Pfam Domains:
PF01231 - Indoleamine 2,3-dioxygenase

SCOP Domains:
140959 - Indolic compounds 2,3-dioxygenase-like

ModBase Predicted Comparative 3D Structure on Q8R0V5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGDEnsembl   
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004833 tryptophan 2,3-dioxygenase activity
GO:0016491 oxidoreductase activity
GO:0020037 heme binding
GO:0033754 indoleamine 2,3-dioxygenase activity
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity

Biological Process:
GO:0002376 immune system process
GO:0006569 tryptophan catabolic process
GO:0019441 tryptophan catabolic process to kynurenine
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK082385 - Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230043N17 product:hypothetical Indoleamine 2,3-dioxygenase containing protein, full insert sequence.
BC026393 - Mus musculus indoleamine 2,3-dioxygenase 2, mRNA (cDNA clone MGC:31194 IMAGE:4195134), complete cds.
EF137182 - Mus musculus indoleamine 2,3-dioxygenase-like protein (C230043N17) mRNA, complete cds.
EU440733 - Mus musculus truncated indoleamine 2,3-dioxygenase-2 mRNA, partial cds, alternatively spliced.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00380 - Tryptophan metabolism
mmu01100 - Metabolic pathways
mmu05143 - African trypanosomiasis

Reactome (by CSHL, EBI, and GO)

Protein Q8R0V5 (Reactome details) participates in the following event(s):

R-MMU-888614 IDO2 dioxygenates L-Trp to NFK
R-MMU-71240 Tryptophan catabolism
R-MMU-6788656 Histidine, lysine, phenylalanine, tyrosine, proline and tryptophan catabolism
R-MMU-71291 Metabolism of nitrogenous molecules
R-MMU-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: E9QKA9, I23O2_MOUSE, Indol1, NM_145949, Q8R0V5, uc009lez.1, uc009lez.2, uc009lez.3
UCSC ID: uc009lez.3
RefSeq Accession: NM_145949
Protein: Q8R0V5 (aka I23O2_MOUSE)
CCDS: CCDS40298.2

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.