Mouse Gene Galnt7 (ENSMUST00000110316.2) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus polypeptide N-acetylgalactosaminyltransferase 7 (Galnt7), transcript variant 2, mRNA. (from RefSeq NM_001167981)
Gencode Transcript: ENSMUST00000110316.2
Gencode Gene: ENSMUSG00000031608.13
Transcript (Including UTRs)
   Position: mm10 chr8:57,524,700-57,653,003 Size: 128,304 Total Exon Count: 12 Strand: -
Coding Region
   Position: mm10 chr8:57,526,114-57,652,978 Size: 126,865 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:57,524,700-57,653,003)mRNA (may differ from genome)Protein (657 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: GALT7_MOUSE
DESCRIPTION: RecName: Full=N-acetylgalactosaminyltransferase 7; EC=2.4.1.-; AltName: Full=Polypeptide GalNAc transferase 7; Short=GalNAc-T7; Short=pp-GaNTase 7; AltName: Full=Protein-UDP acetylgalactosaminyltransferase 7; AltName: Full=UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 7;
FUNCTION: Glycopeptide transferase involved in O-linked oligosaccharide biosynthesis, which catalyzes the transfer of an N-acetyl-D-galactosamine residue to an already glycosylated peptide. In contrast to other proteins of the family, it does not act as a peptide transferase that transfers GalNAc onto serine or threonine residue on the protein receptor, but instead requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Some peptide transferase activity is however not excluded, considering that its appropriate peptide substrate may remain unidentified (By similarity).
COFACTOR: Manganese (By similarity).
COFACTOR: Calcium (By similarity).
PATHWAY: Protein modification; protein glycosylation.
SUBCELLULAR LOCATION: Golgi apparatus membrane; Single-pass type II membrane protein (By similarity).
TISSUE SPECIFICITY: Highly expressed in sublingual gland. Expressed at lower level in stomach, small intestiine and colon.
DOMAIN: There are two conserved domains in the glycosyltransferase region: the N-terminal domain (domain A, also called GT1 motif), which is probably involved in manganese coordination and substrate binding and the C-terminal domain (domain B, also called Gal/GalNAc-T motif), which is probably involved in catalytic reaction and UDP-Gal binding (By similarity).
DOMAIN: The ricin B-type lectin domain binds to GalNAc and contributes to the glycopeptide specificity (By similarity).
SIMILARITY: Belongs to the glycosyltransferase 2 family. GalNAc-T subfamily.
SIMILARITY: Contains 1 ricin B-type lectin domain.
SEQUENCE CAUTION: Sequence=AAH07484.1; Type=Erroneous initiation;
WEB RESOURCE: Name=Functional Glycomics Gateway - GTase; Note=N- acetylgalactosaminyltransferase 7; URL="http://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp?gbpId=gt_mou_516";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.3025-0.132 Picture PostScript Text
3' UTR -385.001414-0.272 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001173 - Glyco_trans_2
IPR000772 - Ricin_B_lectin

Pfam Domains:
PF00535 - Glycosyl transferase family 2
PF00652 - Ricin-type beta-trefoil lectin domain
PF02709 - N-terminal domain of galactosyltransferase

SCOP Domains:
50370 - Ricin B-like lectins
53448 - Nucleotide-diphospho-sugar transferases

ModBase Predicted Comparative 3D Structure on Q80VA0
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl WormBase 
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004653 polypeptide N-acetylgalactosaminyltransferase activity
GO:0016740 transferase activity
GO:0016757 transferase activity, transferring glycosyl groups
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding

Biological Process:
GO:0006486 protein glycosylation
GO:0006493 protein O-linked glycosylation

Cellular Component:
GO:0000139 Golgi membrane
GO:0005794 Golgi apparatus
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK152205 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830054N24 product:UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7, full insert sequence.
AK033427 - Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030023F11 product:UDP-N-ACETYL-ALPHA-D-GALACTOSAMINE:POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 7, full insert sequence.
BC052461 - Mus musculus UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7, mRNA (cDNA clone MGC:63365 IMAGE:6834581), complete cds.
AK036523 - Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830126N15 product:UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7, full insert sequence.
BC007484 - Mus musculus UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7, mRNA (cDNA clone IMAGE:3496023), partial cds.
AK151424 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830030A02 product:UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7, full insert sequence.
AK151753 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830036H07 product:UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7, full insert sequence.
AK153143 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830125B04 product:UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7, full insert sequence.
BC049907 - Mus musculus UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7, mRNA (cDNA clone IMAGE:4457244), partial cds.
AK030683 - Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched library, clone:5430430D04 product:UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7, full insert sequence.
AF349573 - Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 mRNA, complete cds.
AK041791 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630038F14 product:UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00512 - Mucin type O-Glycan biosynthesis
mmu01100 - Metabolic pathways

Reactome (by CSHL, EBI, and GO)

Protein Q80VA0 (Reactome details) participates in the following event(s):

R-MMU-913675 GALNTs transfer GalNAc from UDP-GalNAc to mucins to form Tn antigens
R-MMU-913709 O-linked glycosylation of mucins
R-MMU-5173105 O-linked glycosylation
R-MMU-597592 Post-translational protein modification
R-MMU-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: GALT7_MOUSE, NM_001167981, Q80VA0, Q8BY62, Q8BZ70, Q8BZW0, Q91VW6, Q99MD7, uc009lsz.1, uc009lsz.2, uc009lsz.3
UCSC ID: uc009lsz.3
RefSeq Accession: NM_001167981
Protein: Q80VA0 (aka GALT7_MOUSE or GLT7_MOUSE)
CCDS: CCDS52552.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.