Mouse Gene Neto2 (ENSMUST00000109686.3) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus neuropilin (NRP) and tolloid (TLL)-like 2 (Neto2), transcript variant 3, mRNA. (from RefSeq NM_001081324)
Gencode Transcript: ENSMUST00000109686.3
Gencode Gene: ENSMUSG00000036902.11
Transcript (Including UTRs)
   Position: mm10 chr8:85,636,588-85,690,973 Size: 54,386 Total Exon Count: 9 Strand: -
Coding Region
   Position: mm10 chr8:85,640,536-85,690,973 Size: 50,438 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:85,636,588-85,690,973)mRNA (may differ from genome)Protein (553 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
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PubMedSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: NETO2_MOUSE
DESCRIPTION: RecName: Full=Neuropilin and tolloid-like protein 2; AltName: Full=Brain-specific transmembrane protein containing 2 CUB and 1 LDL-receptor class A domains protein 2; Flags: Precursor;
FUNCTION: Accessory subunit of neuronal kainate-sensitive glutamate receptors, GRIK2 and GRIK3. Increases kainate-receptor channel activity, slowing the decay kinetics of the receptors, without affecting their expression at the cell surface, and increasing the open probability of the receptor channels. Modulates the agonist sensitivity of kainate receptors. Slows the decay of kainate receptor-mediated excitatory postsynaptic currents (EPSCs), thus directly influencing synaptic transmission (By similarity).
SUBUNIT: Interacts with GRIK2 and GRIK3, but neither with AMPA-nor with NMDA-sensitive glutamate receptors (By similarity).
SUBCELLULAR LOCATION: Isoform 1: Cell membrane; Single-pass type I membrane protein (Potential).
SUBCELLULAR LOCATION: Isoform 2: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expressed in brain tissues, including cerebellar granule cells (at protein level).
DEVELOPMENTAL STAGE: Observed restrictively in brain throughout embryonic (E) and postnatal stages (P). Expression pattern in brain slightly changes from E13 to P21.
PTM: N-glycosylated (By similarity).
SIMILARITY: Contains 2 CUB domains.
SIMILARITY: Contains 1 LDL-receptor class A domain.
SEQUENCE CAUTION: Sequence=BAC38225.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -892.243948-0.226 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000859 - CUB
IPR023415 - LDLR_class-A_CS
IPR002172 - LDrepeatLR_classA_rpt

Pfam Domains:
PF00057 - Low-density lipoprotein receptor domain class A
PF00431 - CUB domain

SCOP Domains:
49854 - Spermadhesin, CUB domain
57424 - LDL receptor-like module

ModBase Predicted Comparative 3D Structure on Q8BNJ6
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0035255 ionotropic glutamate receptor binding

Biological Process:
GO:2000312 regulation of kainate selective glutamate receptor activity

Cellular Component:
GO:0005886 plasma membrane
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0045202 synapse


-  Descriptions from all associated GenBank mRNAs
  AK083010 - Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530032N24 product:unclassifiable, full insert sequence.
BC068168 - Mus musculus neuropilin (NRP) and tolloid (TLL)-like 2, mRNA (cDNA clone IMAGE:30544936), with apparent retained intron.
AK035815 - Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630007F23 product:unclassifiable, full insert sequence.
BC157941 - Mus musculus neuropilin (NRP) and tolloid (TLL)-like 2, mRNA (cDNA clone MGC:189934 IMAGE:9088121), complete cds.
BC172104 - Mus musculus neuropilin (NRP) and tolloid (TLL)-like 2, mRNA (cDNA clone MGC:198809 IMAGE:9054390), complete cds.
BC172139 - Mus musculus neuropilin (NRP) and tolloid (TLL)-like 2, mRNA (cDNA clone MGC:198844 IMAGE:9054809), complete cds.
BC151050 - Mus musculus neuropilin (NRP) and tolloid (TLL)-like 2, mRNA (cDNA clone MGC:183963 IMAGE:9087963), complete cds.
AK047354 - Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930052M22 product:RIKEN cDNA 5530601C23 gene, full insert sequence.
AK083512 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030038A19 product:hypothetical LDL-receptor class A (LDLRA) domain profile/CUB domain/Low density lipoprotein (LDL)-receptor class A (LDLRA) domain/CUB domain profile containing protein, full insert sequence.
AK081462 - Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130019F04 product:hypothetical LDL-receptor class A (LDLRA) domain profile/CUB domain/Low density lipoprotein (LDL)-receptor class A (LDLRA) domain/CUB domain profile containing protein, full insert sequence.
AK017458 - Mus musculus 10 days neonate head cDNA, RIKEN full-length enriched library, clone:5530601C23 product:hypothetical CUB domain containing protein, full insert sequence.
AY138991 - Mus musculus brain-specific transmembrane protein BTCL2 mRNA, complete cds.
AK081036 - Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930072I12 product:unclassifiable, full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RX93, Btcl2, NETO2_MOUSE, NM_001081324, Q5VM49, Q8BNJ6, Q8C4Q8, uc009mqc.1, uc009mqc.2
UCSC ID: uc009mqc.2
RefSeq Accession: NM_001081324
Protein: Q8BNJ6 (aka NETO2_MOUSE)
CCDS: CCDS40423.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.