Mouse Gene Dpep1 (ENSMUST00000019422.5) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus dipeptidase 1 (Dpep1), mRNA. (from RefSeq NM_007876)
Gencode Transcript: ENSMUST00000019422.5
Gencode Gene: ENSMUSG00000019278.5
Transcript (Including UTRs)
   Position: mm10 chr8:123,186,242-123,201,812 Size: 15,571 Total Exon Count: 11 Strand: +
Coding Region
   Position: mm10 chr8:123,194,083-123,201,059 Size: 6,977 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:123,186,242-123,201,812)mRNA (may differ from genome)Protein (410 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: DPEP1_MOUSE
DESCRIPTION: RecName: Full=Dipeptidase 1; EC=3.4.13.19; AltName: Full=Membrane-bound dipeptidase 1; Short=MBD-1; AltName: Full=Microsomal dipeptidase; AltName: Full=Renal dipeptidase; Flags: Precursor;
FUNCTION: Hydrolyzes a wide range of dipeptides. Implicated in the renal metabolism of glutathione and its conjugates. Converts leukotriene D4 to leukotriene E4; it may play an important role in the regulation of leukotriene activity.
CATALYTIC ACTIVITY: Hydrolysis of dipeptides.
COFACTOR: Zinc.
ENZYME REGULATION: Inhibited by L-penicillamine.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=10 uM for leukotriene D4; KM=0.45 mM for cystinyl-bis-glycine; KM=111 uM for beta-lactam;
SUBUNIT: Homodimer; disulfide-linked.
SUBCELLULAR LOCATION: Apical cell membrane; Lipid-anchor, GPI- anchor. Cell projection, microvillus membrane; Lipid-anchor, GPI- anchor. Note=Brush border membrane.
SIMILARITY: Belongs to the peptidase M19 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -102.80250-0.411 Picture PostScript Text
3' UTR -262.60753-0.349 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000180 - Pept_M19_AS
IPR008257 - Peptidase_M19

Pfam Domains:
PF01244 - Membrane dipeptidase (Peptidase family M19)

SCOP Domains:
51556 - Metallo-dependent hydrolases

ModBase Predicted Comparative 3D Structure on P31428
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsemblEnsembl  
Protein SequenceProtein Sequence Protein Sequence  
AlignmentAlignment Alignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008233 peptidase activity
GO:0008235 metalloexopeptidase activity
GO:0008237 metallopeptidase activity
GO:0008239 dipeptidyl-peptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0016805 dipeptidase activity
GO:0034235 GPI anchor binding
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0046872 metal ion binding
GO:0070573 metallodipeptidase activity
GO:0072341 modified amino acid binding

Biological Process:
GO:0006508 proteolysis
GO:0006915 apoptotic process
GO:0016999 antibiotic metabolic process
GO:0030336 negative regulation of cell migration
GO:0035690 cellular response to drug
GO:0043066 negative regulation of apoptotic process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0050667 homocysteine metabolic process
GO:0071277 cellular response to calcium ion
GO:0071732 cellular response to nitric oxide

Cellular Component:
GO:0005615 extracellular space
GO:0005634 nucleus
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016324 apical plasma membrane
GO:0030054 cell junction
GO:0031225 anchored component of membrane
GO:0031528 microvillus membrane
GO:0042995 cell projection
GO:0045177 apical part of cell


-  Descriptions from all associated GenBank mRNAs
  U48390 - Mus musculus membrane bound dipeptidase type II mRNA, 5' untranslated region.
D13139 - Mus musculus mRNA for dipeptidase precursor, complete cds.
E06982 - DNA encoding mouse dehydropeptidase I(DHP-I).
BC003492 - Mus musculus dipeptidase 1 (renal), mRNA (cDNA clone MGC:6318 IMAGE:2812088), complete cds.
AK002380 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610009E10 product:dipeptidase 1 (renal), full insert sequence.
AK132644 - Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833444G17 product:dipeptidase 1 (renal), full insert sequence.
U48387 - Mus musculus membrane bound dipeptidase type A mRNA, 3' untranslated region.
U48388 - Mus musculus membrane bound dipeptidase type B mRNA, 3' untranslated region.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P31428 (Reactome details) participates in the following event(s):

R-MMU-266012 LTD4 is converted to LTE4 by DPEP1/2
R-MMU-5433067 DPEPs hydrolyse glycine from AFXBO-CG, AFNBO-CG
R-MMU-2142691 Synthesis of Leukotrienes (LT) and Eoxins (EX)
R-MMU-5423646 Aflatoxin activation and detoxification
R-MMU-2142753 Arachidonic acid metabolism
R-MMU-211859 Biological oxidations
R-MMU-8978868 Fatty acid metabolism
R-MMU-1430728 Metabolism
R-MMU-556833 Metabolism of lipids

-  Other Names for This Gene
  Alternate Gene Symbols: DPEP1_MOUSE, G5E824, Mbd1, NM_007876, P31428, Rdp, uc009nui.1, uc009nui.2, uc009nui.3, uc009nui.4
UCSC ID: uc009nui.4
RefSeq Accession: NM_007876
Protein: P31428 (aka DPEP1_MOUSE)
CCDS: CCDS22750.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.