Mouse Gene Hinfp (ENSMUST00000216508.1) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus histone H4 transcription factor (Hinfp), mRNA. (from RefSeq NM_172162)
Gencode Transcript: ENSMUST00000216508.1
Gencode Gene: ENSMUSG00000032119.5
Transcript (Including UTRs)
   Position: mm10 chr9:44,292,440-44,305,671 Size: 13,232 Total Exon Count: 10 Strand: -
Coding Region
   Position: mm10 chr9:44,296,196-44,302,578 Size: 6,383 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:44,292,440-44,305,671)mRNA (may differ from genome)Protein (503 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: HINFP_MOUSE
DESCRIPTION: RecName: Full=Histone H4 transcription factor; AltName: Full=Histone nuclear factor P; Short=HiNF-P; AltName: Full=MBD2-interacting zinc finger protein; AltName: Full=Methyl-CpG-binding protein 2-interacting zinc finger protein;
FUNCTION: Transcriptional repressor that binds to the consensus sequence 5'-CGGACGTT-3' and to the RB1 promoter. Transcriptional activator that promotes histone H4 gene transcription at the G1/S phase transition in conjunction with NPAT. Also activates transcription of the ATM and PRKDC genes. Autoregulates its expression by associating with its own promoter.
SUBUNIT: Binds MBD2 and a histone deacetylase complex. Interacts with NPAT (By similarity).
SUBCELLULAR LOCATION: Nucleus (By similarity). Note=Associated with discrete nuclear foci (By similarity).
PTM: Ubiquitinated. Ubiquitination may lead to proteasome-mediated degradation (By similarity).
SIMILARITY: Contains 9 C2H2-type zinc fingers.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.4065-0.314 Picture PostScript Text
3' UTR -1253.303756-0.334 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF12874 - Zinc-finger of C2H2 type
PF13894 - C2H2-type zinc finger
PF13912 - C2H2-type zinc finger
PF13913 - zinc-finger of a C2HC-type

SCOP Domains:
57667 - beta-beta-alpha zinc fingers

ModBase Predicted Comparative 3D Structure on Q8K1K9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD  WormBase 
Protein SequenceProtein Sequence  Protein Sequence 
AlignmentAlignment  Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0003713 transcription coactivator activity
GO:0019899 enzyme binding
GO:0042393 histone binding
GO:0044212 transcription regulatory region DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0000077 DNA damage checkpoint
GO:0000082 G1/S transition of mitotic cell cycle
GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001701 in utero embryonic development
GO:0006281 DNA repair
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0010468 regulation of gene expression
GO:0010628 positive regulation of gene expression
GO:0010629 negative regulation of gene expression
GO:0045184 establishment of protein localization
GO:0045445 myoblast differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045893 positive regulation of transcription, DNA-templated

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0015030 Cajal body
GO:0005730 nucleolus


-  Descriptions from all associated GenBank mRNAs
  LF197545 - JP 2014500723-A/5048: Polycomb-Associated Non-Coding RNAs.
AK049348 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330026H15 product:DKFZP434F162 PROTEIN homolog [Homo sapiens], full insert sequence.
CT010239 - Mus musculus full open reading frame cDNA clone RZPDo836C0651D for gene AA589481, Expressed sequence AA589481; complete cds, incl. stopcodon.
AK049633 - Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530010C09 product:hypothetical Zinc finger, C2H2 type containing protein, full insert sequence.
AK167360 - Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched library, clone:I530008I24 product:hypothetical protein, full insert sequence.
BC029091 - Mus musculus histone H4 transcription factor, mRNA (cDNA clone MGC:27746 IMAGE:2651006), complete cds.
MA433122 - JP 2018138019-A/5048: Polycomb-Associated Non-Coding RNAs.
AK145167 - Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930008D05 product:unclassifiable, full insert sequence.
LF306165 - JP 2014500723-A/113668: Polycomb-Associated Non-Coding RNAs.
LF306166 - JP 2014500723-A/113669: Polycomb-Associated Non-Coding RNAs.
MA541742 - JP 2018138019-A/113668: Polycomb-Associated Non-Coding RNAs.
MA541743 - JP 2018138019-A/113669: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: E9QPQ4, HINFP_MOUSE, Mizf, NM_172162, Q8BWY0, Q8K1K9, uc009pcr.1, uc009pcr.2, uc009pcr.3
UCSC ID: uc009pcr.3
RefSeq Accession: NM_172162
Protein: Q8K1K9 (aka HINFP_MOUSE)
CCDS: CCDS23102.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.