Mouse Gene Zfp280d (ENSMUST00000184517.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: May function as a transcription factor. (from UniProt Q68FE8)
Gencode Transcript: ENSMUST00000184517.7
Gencode Gene: ENSMUSG00000038535.17
Transcript (Including UTRs)
Position: mm10 chr9:72,274,879-72,341,093 Size: 66,215 Total Exon Count: 20 Strand: +
Coding Region
Position: mm10 chr9:72,295,320-72,339,730 Size: 44,411 Coding Exon Count: 19
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: Z280D_MOUSE
DESCRIPTION: RecName: Full=Zinc finger protein 280D; AltName: Full=Suppressor of hairy wing homolog 4;
FUNCTION: May function as a transcription factor.SUBCELLULAR LOCATION: Nucleus (Potential).SIMILARITY: Contains 5 C2H2-type zinc fingers.
Primer design for this transcript
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR025243 - DUF4195
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
Pfam Domains: PF13836 - Domain of unknown function (DUF4195)
PF13912 - C2H2-type zinc finger
SCOP Domains: 57667 - beta-beta-alpha zinc fingers
ModBase Predicted Comparative 3D Structure on Q68FE8
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF197678 - JP 2014500723-A/5181: Polycomb-Associated Non-Coding RNAs.AK169622 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430002J07 product:hypothetical protein, full insert sequence.AK172652 - Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830224P18 product:hypothetical Zn-finger, C2H2 type containing protein, full insert sequence.BC079878 - Mus musculus suppressor of hairy wing homolog 4 (Drosophila), mRNA (cDNA clone MGC:100010 IMAGE:6855096), complete cds.AK146597 - Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920030K07 product:hypothetical protein, full insert sequence.BC042445 - Mus musculus suppressor of hairy wing homolog 4 (Drosophila), mRNA (cDNA clone IMAGE:5368487), with apparent retained intron.MA433255 - JP 2018138019-A/5181: Polycomb-Associated Non-Coding RNAs.AK083266 - Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630032C17 product:unclassifiable, full insert sequence.AK169721 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430012P20 product:unclassifiable, full insert sequence.AK045173 - Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130043A04 product:similar to DJ322P7.1 (ZINC FINGER) (FRAGMENT) [Homo sapiens], full insert sequence.LF308048 - JP 2014500723-A/115551: Polycomb-Associated Non-Coding RNAs.AK052068 - Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230041J17 product:unclassifiable, full insert sequence.AK038065 - Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130075K10 product:hypothetical protein, full insert sequence.LF308058 - JP 2014500723-A/115561: Polycomb-Associated Non-Coding RNAs.MA543625 - JP 2018138019-A/115551: Polycomb-Associated Non-Coding RNAs.MA543635 - JP 2018138019-A/115561: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: AK045173, Q3T9B1, Q68FE8, Q8BI82, Suhw4, uc009qpo.1, uc009qpo.2, uc009qpo.3, Z280D_MOUSE, Znf280dUCSC ID: uc009qpo.3RefSeq Accession: NM_001311105
Protein: Q68FE8
(aka Z280D_MOUSE)
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.