Mouse Gene Atp1b3 (ENSMUST00000034983.6) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus ATPase, Na+/K+ transporting, beta 3 polypeptide (Atp1b3), transcript variant 1, mRNA. (from RefSeq NM_007502)Gencode Transcript: ENSMUST00000034983.6Gencode Gene: ENSMUSG00000032412.8Transcript (Including UTRs) Position: mm10 chr9:96,332,655-96,364,442 Size: 31,788 Total Exon Count: 7 Strand: -Coding Region Position: mm10 chr9:96,333,524-96,364,154 Size: 30,631 Coding Exon Count: 7
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: Q544Q7_MOUSE DESCRIPTION: SubName: Full=ATPase, Na+/K+ transporting, beta 3 polypeptide; SubName: Full=MCG21656, isoform CRA_b; SubName: Full=Na,K-ATPase beta-3 subunit;SIMILARITY: Belongs to the X(+)/potassium ATPases subunit beta family.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
D004997
Ethinyl Estradiol
D013749
Tetrachlorodibenzodioxin
C049325
1,2-dithiol-3-thione
C111118
2',3,3',4',5-pentachloro-4-hydroxybiphenyl
C016403
2,4-dinitrotoluene
C023514
2,6-dinitrotoluene
C548651
2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
C573693
2-(4-((4-(6-methoxy-3-pyridinyl)-5-(4-(trifluoromethoxy)phenyl)-2-thiazolyl)methoxy)-2-methylphenoxy)acetic acid
C030370
2-methoxy-5-(2',3',4'-trimethoxyphenyl)tropone
C009505
4,4'-diaminodiphenylmethane
more ... click here to view the complete list
mRNA Secondary Structure of 3' and 5' UTRs
Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR000402 - ATPase_P-typ_cation-exchng_bsuPfam Domains: PF00287 - Sodium / potassium ATPase beta chainModBase Predicted Comparative 3D Structure on Q544Q7 The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF197748 - JP 2014500723-A/5251: Polycomb-Associated Non-Coding RNAs.U59761 - Mus musculus Na+,K+-ATPase beta 3 subunit (ATP1B3) mRNA, complete cds.BC079916 - Mus musculus ATPase, Na+/K+ transporting, beta 3 polypeptide, mRNA (cDNA clone MGC:105161 IMAGE:30665138), complete cds.AK168273 - Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730077A15 product:ATPase, Na+/K+ transporting, beta 3 polypeptide, full insert sequence.AK151841 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830040F04 product:ATPase, Na+/K+ transporting, beta 3 polypeptide, full insert sequence.AK159532 - Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420023F18 product:ATPase, Na+/K+ transporting, beta 3 polypeptide, full insert sequence.AK032516 - Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430578D15 product:ATPase, Na+/K+ transporting, beta 3 polypeptide, full insert sequence.AK151700 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830034J08 product:ATPase, Na+/K+ transporting, beta 3 polypeptide, full insert sequence.AK161282 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4922505C17 product:ATPase, Na+/K+ transporting, beta 3 polypeptide, full insert sequence.AK148495 - Mus musculus adult pancreas islet cells cDNA, RIKEN full-length enriched library, clone:C820011C18 product:ATPase, Na+/K+ transporting, beta 3 polypeptide, full insert sequence.BC114530 - Mus musculus ATPase, Na+/K+ transporting, beta 3 polypeptide, mRNA (cDNA clone IMAGE:40051348), partial cds.AK191321 - Mus musculus cDNA, clone:Y1G0105I04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK177007 - Mus musculus cDNA, clone:Y0G0101E10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK218119 - Mus musculus cDNA, clone:Y2G0144B06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.MA433325 - JP 2018138019-A/5251: Polycomb-Associated Non-Coding RNAs.AK205378 - Mus musculus cDNA, clone:Y2G0101H22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK217555 - Mus musculus cDNA, clone:Y2G0142C21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK206397 - Mus musculus cDNA, clone:Y2G0104L15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK219621 - Mus musculus cDNA, clone:Y2G0149A19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK214071 - Mus musculus cDNA, clone:Y2G0130I05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK217181 - Mus musculus cDNA, clone:Y2G0140P12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK178890 - Mus musculus cDNA, clone:Y0G0108E17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK213033 - Mus musculus cDNA, clone:Y2G0126O17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK181142 - Mus musculus cDNA, clone:Y0G0117B10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK185963 - Mus musculus cDNA, clone:Y0G0135M21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK218295 - Mus musculus cDNA, clone:Y2G0144L05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.LF308932 - JP 2014500723-A/116435: Polycomb-Associated Non-Coding RNAs.AK218384 - Mus musculus cDNA, clone:Y2G0145A17, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK214140 - Mus musculus cDNA, clone:Y2G0130M14, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK188243 - Mus musculus cDNA, clone:Y0G0144I11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK212665 - Mus musculus cDNA, clone:Y2G0125L13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.LF308933 - JP 2014500723-A/116436: Polycomb-Associated Non-Coding RNAs.AK212804 - Mus musculus cDNA, clone:Y2G0126C17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK193928 - Mus musculus cDNA, clone:Y1G0113M12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK205937 - Mus musculus cDNA, clone:Y2G0103E04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK211375 - Mus musculus cDNA, clone:Y2G0121I18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK216038 - Mus musculus cDNA, clone:Y2G0136P21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK218465 - Mus musculus cDNA, clone:Y2G0145E14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.LF308934 - JP 2014500723-A/116437: Polycomb-Associated Non-Coding RNAs.DQ726599 - Mus musculus piRNA piR-141921, complete sequence.AK214488 - Mus musculus cDNA, clone:Y2G0131O21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK183773 - Mus musculus cDNA, clone:Y0G0127C09, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK184289 - Mus musculus cDNA, clone:Y0G0129G08, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK187489 - Mus musculus cDNA, clone:Y0G0142A17, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK191891 - Mus musculus cDNA, clone:Y1G0107E08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK196807 - Mus musculus cDNA, clone:Y1G0123A21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK197361 - Mus musculus cDNA, clone:Y1G0124N20, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK197893 - Mus musculus cDNA, clone:Y1G0126H21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK198328 - Mus musculus cDNA, clone:Y1G0127N08, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK201629 - Mus musculus cDNA, clone:Y1G0138N13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK201955 - Mus musculus cDNA, clone:Y1G0139O14, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK202123 - Mus musculus cDNA, clone:Y1G0140H03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK206931 - Mus musculus cDNA, clone:Y2G0106G11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK209421 - Mus musculus cDNA, clone:Y2G0115B06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK213610 - Mus musculus cDNA, clone:Y2G0128N18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK216009 - Mus musculus cDNA, clone:Y2G0136O08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK201992 - Mus musculus cDNA, clone:Y1G0140A15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.LF308935 - JP 2014500723-A/116438: Polycomb-Associated Non-Coding RNAs.LF308936 - JP 2014500723-A/116439: Polycomb-Associated Non-Coding RNAs.LF308937 - JP 2014500723-A/116440: Polycomb-Associated Non-Coding RNAs.LF308938 - JP 2014500723-A/116441: Polycomb-Associated Non-Coding RNAs.MA544509 - JP 2018138019-A/116435: Polycomb-Associated Non-Coding RNAs.MA544510 - JP 2018138019-A/116436: Polycomb-Associated Non-Coding RNAs.MA544511 - JP 2018138019-A/116437: Polycomb-Associated Non-Coding RNAs.MA544512 - JP 2018138019-A/116438: Polycomb-Associated Non-Coding RNAs.MA544513 - JP 2018138019-A/116439: Polycomb-Associated Non-Coding RNAs.MA544514 - JP 2018138019-A/116440: Polycomb-Associated Non-Coding RNAs.MA544515 - JP 2018138019-A/116441: Polycomb-Associated Non-Coding RNAs.LF308944 - JP 2014500723-A/116447: Polycomb-Associated Non-Coding RNAs.LF311254 - JP 2014500723-A/118757: Polycomb-Associated Non-Coding RNAs.LF308946 - JP 2014500723-A/116449: Polycomb-Associated Non-Coding RNAs.LF308947 - JP 2014500723-A/116450: Polycomb-Associated Non-Coding RNAs.LF311253 - JP 2014500723-A/118756: Polycomb-Associated Non-Coding RNAs.LF308949 - JP 2014500723-A/116452: Polycomb-Associated Non-Coding RNAs.AK194785 - Mus musculus cDNA, clone:Y1G0116G21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK196817 - Mus musculus cDNA, clone:Y1G0123B13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK202960 - Mus musculus cDNA, clone:Y1G0143E16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK183986 - Mus musculus cDNA, clone:Y0G0128C17, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK186227 - Mus musculus cDNA, clone:Y0G0136K20, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.AK190411 - Mus musculus cDNA, clone:Y1G0102K18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034983, based on BLAT search.LF308961 - JP 2014500723-A/116464: Polycomb-Associated Non-Coding RNAs.MA544521 - JP 2018138019-A/116447: Polycomb-Associated Non-Coding RNAs.MA546831 - JP 2018138019-A/118757: Polycomb-Associated Non-Coding RNAs.MA544523 - JP 2018138019-A/116449: Polycomb-Associated Non-Coding RNAs.MA544524 - JP 2018138019-A/116450: Polycomb-Associated Non-Coding RNAs.MA546830 - JP 2018138019-A/118756: Polycomb-Associated Non-Coding RNAs.MA544526 - JP 2018138019-A/116452: Polycomb-Associated Non-Coding RNAs.MA544538 - JP 2018138019-A/116464: Polycomb-Associated Non-Coding RNAs.
Biochemical and Signaling Pathways
KEGG - Kyoto Encyclopedia of Genes and Genomes mmu04260 - Cardiac muscle contractionmmu04960 - Aldosterone-regulated sodium reabsorptionmmu04961 - Endocrine and other factor-regulated calcium reabsorptionmmu04964 - Proximal tubule bicarbonate reclamationmmu04970 - Salivary secretionmmu04971 - Gastric acid secretionmmu04972 - Pancreatic secretionmmu04973 - Carbohydrate digestion and absorptionmmu04974 - Protein digestion and absorptionmmu04976 - Bile secretionmmu04978 - Mineral absorption
Other Names for This Gene
Alternate Gene Symbols: mCG_21656, NM_007502, Q544Q7, Q544Q7_MOUSE, uc009rck.1, uc009rck.2, uc009rck.3, uc009rck.4UCSC ID: uc009rck.4RefSeq Accession: NM_007502 Protein: Q544Q7
CCDS: CCDS23414.1
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.
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