Mouse Gene Nmnat3 (ENSMUST00000112935.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus nicotinamide nucleotide adenylyltransferase 3 (Nmnat3), transcript variant 1, mRNA. (from RefSeq NM_144533)
Gencode Transcript: ENSMUST00000112935.7
Gencode Gene: ENSMUSG00000032456.13
Transcript (Including UTRs)
   Position: mm10 chr9:98,296,583-98,411,434 Size: 114,852 Total Exon Count: 5 Strand: +
Coding Region
   Position: mm10 chr9:98,354,056-98,410,441 Size: 56,386 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:98,296,583-98,411,434)mRNA (may differ from genome)Protein (245 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsMGIPubMed
ReactomeSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: NMNA3_MOUSE
DESCRIPTION: RecName: Full=Nicotinamide mononucleotide adenylyltransferase 3; Short=NMN adenylyltransferase 3; EC=2.7.7.1; AltName: Full=Nicotinate-nucleotide adenylyltransferase 1; Short=NaMN adenylyltransferase 1; EC=2.7.7.18;
FUNCTION: Catalyzes the formation of NAD(+) from nicotinamide mononucleotide (NMN) and ATP. Can also use the deamidated form; nicotinic acid mononucleotide (NaMN) as substrate with the same efficiency. Can use triazofurin monophosphate (TrMP) as substrate. Can also use GTP and ITP as nucleotide donors. Also catalyzes the reverse reaction, i.e. the pyrophosphorolytic cleavage of NAD(+). For the pyrophosphorolytic activity, can use NAD (+), NADH, NAAD, nicotinic acid adenine dinucleotide phosphate (NHD), nicotinamide guanine dinucleotide (NGD) as substrates. Fails to cleave phosphorylated dinucleotides NADP(+), NADPH and NAADP(+). Protects against axonal degeneration following injury.
CATALYTIC ACTIVITY: ATP + nicotinamide ribonucleotide = diphosphate + NAD(+).
CATALYTIC ACTIVITY: ATP + beta-nicotinate-D-ribonucleotide = diphosphate + deamido-NAD(+).
COFACTOR: Divalent metal cations. Magnesium confers the highest activity (By similarity).
ENZYME REGULATION: Activity is strongly inhibited by galotannin. Inhibited by P1-(adenosine-5')-P4-(nicotinic-acid-riboside-5')- tetraphosphate (Nap4AD) (By similarity).
PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from nicotinamide D-ribonucleotide: step 1/1.
SUBUNIT: Homotetramer (By similarity).
SUBCELLULAR LOCATION: Mitochondrion.
DEVELOPMENTAL STAGE: Expressed throughout development and in adulthood.
SIMILARITY: Belongs to the eukaryotic NMN adenylyltransferase family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -185.20435-0.426 Picture PostScript Text
3' UTR -305.30993-0.307 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004820 - Cytidylyltransf
IPR005248 - NAMN_adtrnsfrase
IPR014729 - Rossmann-like_a/b/a_fold

Pfam Domains:
PF01467 - Cytidylyltransferase-like

SCOP Domains:
116927 - EspA/CesA-like
52374 - Nucleotidylyl transferase

ModBase Predicted Comparative 3D Structure on Q99JR6
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
 RGDEnsembl WormBase 
 Protein Sequence  Protein Sequence 
 Alignment  Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000309 nicotinamide-nucleotide adenylyltransferase activity
GO:0003824 catalytic activity
GO:0004515 nicotinate-nucleotide adenylyltransferase activity
GO:0005524 ATP binding
GO:0016740 transferase activity
GO:0016779 nucleotidyltransferase activity

Biological Process:
GO:0009058 biosynthetic process
GO:0009435 NAD biosynthetic process
GO:0009611 response to wounding
GO:0019363 pyridine nucleotide biosynthetic process
GO:0034628 'de novo' NAD biosynthetic process from aspartate

Cellular Component:
GO:0005739 mitochondrion


-  Descriptions from all associated GenBank mRNAs
  AK016744 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933408N02 product:unclassifiable, full insert sequence.
BC005737 - Mus musculus nicotinamide nucleotide adenylyltransferase 3, mRNA (cDNA clone MGC:11917 IMAGE:3599134), complete cds.
AK040783 - Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530024M19 product:unclassifiable, full insert sequence.
AK041526 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630019F12 product:similar to FKSG76 [Homo sapiens], full insert sequence.
AK041897 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630045I16 product:similar to FKSG76 [Homo sapiens], full insert sequence.
BC092086 - Mus musculus nicotinamide nucleotide adenylyltransferase 3, mRNA (cDNA clone MGC:102340 IMAGE:5040019), complete cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00760 - Nicotinate and nicotinamide metabolism
mmu01100 - Metabolic pathways

Reactome (by CSHL, EBI, and GO)

Protein Q99JR6 (Reactome details) participates in the following event(s):

R-MMU-200474 NMNAT3 transfers an adenylyl group from ATP to NAMN to yield NAAD
R-MMU-196807 Nicotinate metabolism
R-MMU-196849 Metabolism of water-soluble vitamins and cofactors
R-MMU-196854 Metabolism of vitamins and cofactors
R-MMU-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: NMNA3_MOUSE, NM_144533, Q58E37, Q99JR6, uc009rdh.1, uc009rdh.2
UCSC ID: uc009rdh.2
RefSeq Accession: NM_144533
Protein: Q99JR6 (aka NMNA3_MOUSE or NMA3_MOUSE)
CCDS: CCDS23423.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.