Mouse Gene Rbms3 (ENSMUST00000164018.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
Description: Mus musculus RNA binding motif, single stranded interacting protein (Rbms3), transcript variant 4, mRNA. (from RefSeq NM_001172121)
Gencode Transcript: ENSMUST00000164018.8
Gencode Gene: ENSMUSG00000039607.16
Transcript (Including UTRs)
Position: mm10 chr9:116,578,025-117,629,913 Size: 1,051,889 Total Exon Count: 15 Strand: -
Coding Region
Position: mm10 chr9:116,578,696-117,629,850 Size: 1,051,155 Coding Exon Count: 15
Data last updated at UCSC: 2019-09-19
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: RBMS3_MOUSE
DESCRIPTION: RecName: Full=RNA-binding motif, single-stranded-interacting protein 3;
FUNCTION: Binds poly(A) and poly(U) oligoribonucleotides (By similarity).SUBCELLULAR LOCATION: Cytoplasm (By similarity).SIMILARITY: Contains 2 RRM (RNA recognition motif) domains.SEQUENCE CAUTION: Sequence=BAC34878.1; Type=Erroneous initiation;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR002343 - Hud_Sxl_RNA
IPR012677 - Nucleotide-bd_a/b_plait
IPR000504 - RRM_dom
Pfam Domains: PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SCOP Domains: 54928 - RNA-binding domain, RBD
ModBase Predicted Comparative 3D Structure on Q8BWL5
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK046197 - Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230350F07 product:similar to RNA-BINDING PROTEIN [Homo sapiens], full insert sequence.BC108402 - Mus musculus RNA binding motif, single stranded interacting protein, mRNA (cDNA clone MGC:118437 IMAGE:6516420), complete cds.BC033604 - Mus musculus RNA binding motif, single stranded interacting protein, mRNA (cDNA clone IMAGE:5370114), partial cds.AK030478 - Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330417B20 product:RNA-BINDING PROTEIN homolog [Homo sapiens], full insert sequence.BC117841 - Mus musculus RNA binding motif, single stranded interacting protein, mRNA (cDNA clone MGC:143780 IMAGE:40093225), complete cds.AK033005 - Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720490M18 product:hypothetical RNA-binding region RNP-1 (RNA recognition motif) containing protein, full insert sequence.AK030609 - Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330438F10 product:RNA-BINDING PROTEIN homolog [Homo sapiens], full insert sequence.AK032938 - Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720477E09 product:RNA-BINDING PROTEIN homolog [Homo sapiens], full insert sequence.AK041098 - Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530082O13 product:RNA-BINDING PROTEIN homolog [Homo sapiens], full insert sequence.AK052196 - Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330006C15 product:RNA-BINDING PROTEIN homolog [Homo sapiens], full insert sequence.AK051776 - Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130078B10 product:similar to RNA-BINDING PROTEIN [Homo sapiens], full insert sequence.AK081921 - Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130087I15 product:similar to MSSP-2 (FRAGMENT) [Homo sapiens], full insert sequence.AK162457 - Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430056P15 product:similar to MSSP-2 (Fragment) [Homo sapiens], full insert sequence.AK032862 - Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720463O22 product:inferred: RNA-binding protein {Homo sapiens}, full insert sequence.AK161824 - Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030490G06 product:unclassifiable, full insert sequence.AK084939 - Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430017D17 product:hypothetical protein, full insert sequence.
Other Names for This Gene
Alternate Gene Symbols: NM_001172121, Q2VPR0, Q8BL73, Q8BLW6, Q8BMA7, Q8BMB5, Q8BML0, Q8BMN1, Q8BWL5, RBMS3_MOUSE, uc009rza.1, uc009rza.2, uc009rza.3, uc009rza.4, uc009rza.5UCSC ID: uc009rza.5RefSeq Accession: NM_001172121
Protein: Q8BWL5
(aka RBMS3_MOUSE)
CCDS: CCDS57712.1
Gene Model Information
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.