Human Gene ZC3H18 (uc010chw.3) Description and Page Index
  Description: Homo sapiens zinc finger CCCH-type containing 18 (ZC3H18), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:88,677,676-88,698,372 Size: 20,697 Total Exon Count: 8 Strand: +


Page IndexSequence and LinksGenetic AssociationsCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:88,677,676-88,698,372)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneNetworkH-INVHGNC
LynxPubMedStanford SOURCETreefam

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): ZC3H18
CDC HuGE Published Literature: ZC3H18

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.95 RPKM in Testis
Total median expression: 638.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK302716 - Homo sapiens cDNA FLJ52876 complete cds, moderately similar to Homo sapiens conserved nuclear protein NHN1 (NHN1), mRNA.
AK300254 - Homo sapiens cDNA FLJ61387 complete cds, highly similar to Homo sapiens conserved nuclear protein NHN1 (NHN1), mRNA.
AK225807 - Homo sapiens mRNA for conserved nuclear protein NHN1 variant, clone: FCC130C11.
AK056632 - Homo sapiens cDNA FLJ32070 fis, clone OCBBF1000119.
BC050463 - Homo sapiens zinc finger CCCH-type containing 18, mRNA (cDNA clone MGC:54295 IMAGE:6042036), complete cds.
EU832323 - Synthetic construct Homo sapiens clone HAIB:100067352; DKFZo008E0727 zinc finger CCCH-type containing 18 protein (ZC3H18) gene, encodes complete protein.
EU832408 - Synthetic construct Homo sapiens clone HAIB:100067437; DKFZo004E0728 zinc finger CCCH-type containing 18 protein (ZC3H18) gene, encodes complete protein.
KJ900087 - Synthetic construct Homo sapiens clone ccsbBroadEn_09481 ZC3H18 gene, encodes complete protein.
BC001584 - Homo sapiens zinc finger CCCH-type containing 18, mRNA (cDNA clone IMAGE:3461401), partial cds.
AK091849 - Homo sapiens cDNA FLJ34530 fis, clone HLUNG2008153, highly similar to Homo sapiens conserved nuclear protein NHN1 (NHN1), mRNA.
AX747220 - Sequence 745 from Patent EP1308459.
AK122593 - Homo sapiens mRNA for FLJ00419 protein.
AK093394 - Homo sapiens cDNA FLJ36075 fis, clone TESTI2019729, highly similar to Homo sapiens conserved nuclear protein NHN1 (NHN1), mRNA.
AX748097 - Sequence 1622 from Patent EP1308459.
AK026317 - Homo sapiens cDNA: FLJ22664 fis, clone HSI08202.
JD216206 - Sequence 197230 from Patent EP1572962.
JD060367 - Sequence 41391 from Patent EP1572962.
JD539896 - Sequence 520920 from Patent EP1572962.
JD335664 - Sequence 316688 from Patent EP1572962.
JD124903 - Sequence 105927 from Patent EP1572962.
JD406528 - Sequence 387552 from Patent EP1572962.
JD402731 - Sequence 383755 from Patent EP1572962.
JD164805 - Sequence 145829 from Patent EP1572962.
JD259843 - Sequence 240867 from Patent EP1572962.
JD254039 - Sequence 235063 from Patent EP1572962.
JD487414 - Sequence 468438 from Patent EP1572962.
JD468162 - Sequence 449186 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK056632
UCSC ID: uc010chw.3
RefSeq Accession: NM_144604

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: AK056632.1
exon count: 8CDS single in 3' UTR: no RNA size: 3057
ORF size: 0CDS single in intron: no Alignment % ID: 99.84
txCdsPredict score: 612.50frame shift in genome: no % Coverage: 52.54
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.