Human Gene FLJ40448 (uc010cic.1) Description and Page Index
  Description: Homo sapiens cDNA FLJ40448 fis, clone TESTI2040815.
Transcript (Including UTRs)
   Position: hg19 chr16:88,809,229-88,812,156 Size: 2,928 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:88,809,229-88,812,156)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaCGAPEnsembl
ExonPrimerH-INVLynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.78 RPKM in Testis
Total median expression: 6.15 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK097767 - Homo sapiens cDNA FLJ40448 fis, clone TESTI2040815.
BC111769 - Homo sapiens hypothetical protein FLJ40448, mRNA (cDNA clone MGC:133175 IMAGE:40025355), complete cds.
JD536756 - Sequence 517780 from Patent EP1572962.
JD416813 - Sequence 397837 from Patent EP1572962.
JD544182 - Sequence 525206 from Patent EP1572962.
JD218218 - Sequence 199242 from Patent EP1572962.
JD249398 - Sequence 230422 from Patent EP1572962.
JD559990 - Sequence 541014 from Patent EP1572962.
JD264837 - Sequence 245861 from Patent EP1572962.
JD178774 - Sequence 159798 from Patent EP1572962.
JD446049 - Sequence 427073 from Patent EP1572962.
JD433819 - Sequence 414843 from Patent EP1572962.
JD301786 - Sequence 282810 from Patent EP1572962.
JD036977 - Sequence 18001 from Patent EP1572962.
JD222432 - Sequence 203456 from Patent EP1572962.
JD273223 - Sequence 254247 from Patent EP1572962.
JD342610 - Sequence 323634 from Patent EP1572962.
JD221401 - Sequence 202425 from Patent EP1572962.
JD114812 - Sequence 95836 from Patent EP1572962.
JD422904 - Sequence 403928 from Patent EP1572962.
JD079894 - Sequence 60918 from Patent EP1572962.
JD322107 - Sequence 303131 from Patent EP1572962.
JD324550 - Sequence 305574 from Patent EP1572962.
JD453210 - Sequence 434234 from Patent EP1572962.
JD108350 - Sequence 89374 from Patent EP1572962.
JD108351 - Sequence 89375 from Patent EP1572962.
JD376201 - Sequence 357225 from Patent EP1572962.
JD158604 - Sequence 139628 from Patent EP1572962.
JD160035 - Sequence 141059 from Patent EP1572962.
JD202971 - Sequence 183995 from Patent EP1572962.
JD108362 - Sequence 89386 from Patent EP1572962.
JD390349 - Sequence 371373 from Patent EP1572962.
JD187956 - Sequence 168980 from Patent EP1572962.
JD144766 - Sequence 125790 from Patent EP1572962.
JD158964 - Sequence 139988 from Patent EP1572962.
JD158965 - Sequence 139989 from Patent EP1572962.
JD208759 - Sequence 189783 from Patent EP1572962.
JD208760 - Sequence 189784 from Patent EP1572962.
JD112138 - Sequence 93162 from Patent EP1572962.
JD356960 - Sequence 337984 from Patent EP1572962.
JD119082 - Sequence 100106 from Patent EP1572962.
JD144523 - Sequence 125547 from Patent EP1572962.
JD179091 - Sequence 160115 from Patent EP1572962.
JD447286 - Sequence 428310 from Patent EP1572962.
JD366345 - Sequence 347369 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK097767
UCSC ID: uc010cic.1
Representative RNA: AK097767

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: yes RNA accession: AK097767.1
exon count: 2CDS single in 3' UTR: no RNA size: 2140
ORF size: 0CDS single in intron: no Alignment % ID: 99.44
txCdsPredict score: 682.00frame shift in genome: no % Coverage: 97.34
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.