Human Gene ZNF542 (uc010etj.3) Description and Page Index
  Description: Homo sapiens zinc finger protein 542 (ZNF542), transcript variant 1, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr19:56,879,490-56,891,196 Size: 11,707 Total Exon Count: 6 Strand: +


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:56,879,490-56,891,196)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerH-INV
HGNCLynxPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.11 RPKM in Testis
Total median expression: 40.60 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK297170 - Homo sapiens cDNA FLJ58906 complete cds.
BX640680 - Homo sapiens mRNA; cDNA DKFZp686B2197 (from clone DKFZp686B2197).
BX647919 - Homo sapiens mRNA; cDNA DKFZp686I1219 (from clone DKFZp686I1219).
AK097128 - Homo sapiens cDNA FLJ39809 fis, clone SPLEN2009541, highly similar to Zinc finger protein 542.
AL833621 - Homo sapiens mRNA; cDNA DKFZp686I1273 (from clone DKFZp686I1273).
BC064603 - Homo sapiens zinc finger protein 542, mRNA (cDNA clone IMAGE:5784531), partial cds.
BC089419 - Homo sapiens zinc finger protein 542, mRNA (cDNA clone IMAGE:3078727).
JD195759 - Sequence 176783 from Patent EP1572962.
JD440042 - Sequence 421066 from Patent EP1572962.
JD274415 - Sequence 255439 from Patent EP1572962.
JD208113 - Sequence 189137 from Patent EP1572962.
JD090393 - Sequence 71417 from Patent EP1572962.
JD305012 - Sequence 286036 from Patent EP1572962.
LF366739 - JP 2014500723-A/174242: Polycomb-Associated Non-Coding RNAs.
JD097712 - Sequence 78736 from Patent EP1572962.
AB464766 - Synthetic construct DNA, clone: pF1KB9609, Homo sapiens ZNF542 gene for zinc finger protein 542, without stop codon, in Flexi system.
KJ901159 - Synthetic construct Homo sapiens clone ccsbBroadEn_10553 ZNF542 gene, encodes complete protein.
LF366740 - JP 2014500723-A/174243: Polycomb-Associated Non-Coding RNAs.
JD553542 - Sequence 534566 from Patent EP1572962.
JD503009 - Sequence 484033 from Patent EP1572962.
JD501721 - Sequence 482745 from Patent EP1572962.
JD248089 - Sequence 229113 from Patent EP1572962.
JD274547 - Sequence 255571 from Patent EP1572962.
JD274548 - Sequence 255572 from Patent EP1572962.
JD450726 - Sequence 431750 from Patent EP1572962.
JD085207 - Sequence 66231 from Patent EP1572962.
JD250131 - Sequence 231155 from Patent EP1572962.
JD111791 - Sequence 92815 from Patent EP1572962.
JD355687 - Sequence 336711 from Patent EP1572962.
JD543004 - Sequence 524028 from Patent EP1572962.
JD213380 - Sequence 194404 from Patent EP1572962.
JD463293 - Sequence 444317 from Patent EP1572962.
JD295438 - Sequence 276462 from Patent EP1572962.
JD331155 - Sequence 312179 from Patent EP1572962.
JD421222 - Sequence 402246 from Patent EP1572962.
JD414819 - Sequence 395843 from Patent EP1572962.
AK130322 - Homo sapiens cDNA FLJ26812 fis, clone PRS06281.
JD206556 - Sequence 187580 from Patent EP1572962.
JD357364 - Sequence 338388 from Patent EP1572962.
JD243477 - Sequence 224501 from Patent EP1572962.
JD067971 - Sequence 48995 from Patent EP1572962.
JD166466 - Sequence 147490 from Patent EP1572962.
JD382186 - Sequence 363210 from Patent EP1572962.
JD284696 - Sequence 265720 from Patent EP1572962.
JD237124 - Sequence 218148 from Patent EP1572962.
JD350749 - Sequence 331773 from Patent EP1572962.
JD043122 - Sequence 24146 from Patent EP1572962.
JD093447 - Sequence 74471 from Patent EP1572962.
JD425578 - Sequence 406602 from Patent EP1572962.
JD527490 - Sequence 508514 from Patent EP1572962.
JD243337 - Sequence 224361 from Patent EP1572962.
JD518412 - Sequence 499436 from Patent EP1572962.
JD045178 - Sequence 26202 from Patent EP1572962.
JD281599 - Sequence 262623 from Patent EP1572962.
JD517085 - Sequence 498109 from Patent EP1572962.
JD221363 - Sequence 202387 from Patent EP1572962.
JD301385 - Sequence 282409 from Patent EP1572962.
MA602316 - JP 2018138019-A/174242: Polycomb-Associated Non-Coding RNAs.
MA602317 - JP 2018138019-A/174243: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_033418
UCSC ID: uc010etj.3
RefSeq Accession: NR_033418

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: NR_033418.1
exon count: 6CDS single in 3' UTR: no RNA size: 3752
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 490.00frame shift in genome: no % Coverage: 99.47
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.