Human Gene SPATA9 (uc010jbh.1) Description and Page Index
  Description: Homo sapiens spermatogenesis associated 9 (SPATA9), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr5:94,987,885-95,018,695 Size: 30,811 Total Exon Count: 8 Strand: -

Page IndexSequence and LinksGenetic AssociationsMalaCardsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr5:94,987,885-95,018,695)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
LynxPubMedStanford SOURCE

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): SPATA9
CDC HuGE Published Literature: SPATA9
Positive Disease Associations: Respiratory Function Tests
Related Studies:
  1. Respiratory Function Tests
    M Soler Artigas et al. Nature genetics 2011, Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function., Nature genetics. [PubMed 21946350]

-  MalaCards Disease Associations
  MalaCards Gene Search: SPATA9
Diseases sorted by gene-association score: sertoli cell-only syndrome (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 23.21 RPKM in Testis
Total median expression: 38.91 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  AK093225 - Homo sapiens cDNA FLJ35906 fis, clone TESTI2009727.
AX747999 - Sequence 1524 from Patent EP1308459.
AK310260 - Homo sapiens cDNA, FLJ17302.
AY027526 - Homo sapiens NYD-SP16 mRNA, complete cds.
JD274394 - Sequence 255418 from Patent EP1572962.
JD040172 - Sequence 21196 from Patent EP1572962.
JD221289 - Sequence 202313 from Patent EP1572962.
JD434669 - Sequence 415693 from Patent EP1572962.
AK292338 - Homo sapiens cDNA FLJ75142 complete cds, highly similar to Homo sapiens spermatogenesis associated 9 (SPATA9), transcriptvariant 1, mRNA.
JD554303 - Sequence 535327 from Patent EP1572962.
JD087543 - Sequence 68567 from Patent EP1572962.
HM005492 - Homo sapiens clone HTL-T-179 testicular tissue protein Li 179 mRNA, complete cds.
BC047333 - Homo sapiens spermatogenesis associated 9, mRNA (cDNA clone MGC:51802 IMAGE:5166271), complete cds.
BC032832 - Homo sapiens spermatogenesis associated 9, mRNA (cDNA clone MGC:26751 IMAGE:4827641), complete cds.
JD513361 - Sequence 494385 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK310260
UCSC ID: uc010jbh.1
RefSeq Accession: NM_031952

-  Gene Model Information
category: nearCoding nonsense-mediated-decay: yes RNA accession: AK310260.1
exon count: 8CDS single in 3' UTR: no RNA size: 1592
ORF size: 0CDS single in intron: no Alignment % ID: 99.94
txCdsPredict score: 1022.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.