Human Gene ZC3H18 (uc010vpa.1) Description and Page Index
  Description: Homo sapiens zinc finger CCCH-type containing 18 (ZC3H18), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:88,643,518-88,653,100 Size: 9,583 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr16:88,643,532-88,653,100 Size: 9,569 Coding Exon Count: 2 

Page IndexSequence and LinksGenetic AssociationsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:88,643,518-88,653,100)mRNA (may differ from genome)Protein (232 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsGeneNetworkH-INV
HGNCLynxMGIPubMedStanford SOURCETreefam

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): ZC3H18
CDC HuGE Published Literature: ZC3H18

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.95 RPKM in Testis
Total median expression: 638.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AK302716 - Homo sapiens cDNA FLJ52876 complete cds, moderately similar to Homo sapiens conserved nuclear protein NHN1 (NHN1), mRNA.
AK300254 - Homo sapiens cDNA FLJ61387 complete cds, highly similar to Homo sapiens conserved nuclear protein NHN1 (NHN1), mRNA.
AK225807 - Homo sapiens mRNA for conserved nuclear protein NHN1 variant, clone: FCC130C11.
AK056632 - Homo sapiens cDNA FLJ32070 fis, clone OCBBF1000119.
BC050463 - Homo sapiens zinc finger CCCH-type containing 18, mRNA (cDNA clone MGC:54295 IMAGE:6042036), complete cds.
CU690696 - Synthetic construct Homo sapiens gateway clone IMAGE:100021521 5' read NHN1 mRNA.
EU832323 - Synthetic construct Homo sapiens clone HAIB:100067352; DKFZo008E0727 zinc finger CCCH-type containing 18 protein (ZC3H18) gene, encodes complete protein.
EU832408 - Synthetic construct Homo sapiens clone HAIB:100067437; DKFZo004E0728 zinc finger CCCH-type containing 18 protein (ZC3H18) gene, encodes complete protein.
KJ900087 - Synthetic construct Homo sapiens clone ccsbBroadEn_09481 ZC3H18 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: CU690696
UCSC ID: uc010vpa.1
RefSeq Accession: NM_144604

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: CU690696.1
exon count: 2CDS single in 3' UTR: no RNA size: 1266
ORF size: 696CDS single in intron: no Alignment % ID: 99.14
txCdsPredict score: 1537.00frame shift in genome: no % Coverage: 54.98
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 8# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.