Human Gene DBI (ENST00000627093.2) from GENCODE V44
  Description: Homo sapiens diazepam binding inhibitor, acyl-CoA binding protein (DBI), transcript variant 5, mRNA. (from RefSeq NM_001178041)
RefSeq Summary (NM_001178041): This gene encodes diazepam binding inhibitor, a protein that is regulated by hormones and is involved in lipid metabolism and the displacement of beta-carbolines and benzodiazepines, which modulate signal transduction at type A gamma-aminobutyric acid receptors located in brain synapses. The protein is conserved from yeast to mammals, with the most highly conserved domain consisting of seven contiguous residues that constitute the hydrophobic binding site for medium- and long-chain acyl-Coenzyme A esters. Diazepam binding inhibitor is also known to mediate the feedback regulation of pancreatic secretion and the postprandial release of cholecystokinin, in addition to its role as a mediator in corticotropin-dependent adrenal steroidogenesis. Three pseudogenes located on chromosomes 6, 8 and 16 have been identified. Multiple transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
Gencode Transcript: ENST00000627093.2
Gencode Gene: ENSG00000155368.18
Transcript (Including UTRs)
   Position: hg38 chr2:119,366,977-119,372,407 Size: 5,431 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr2:119,367,052-119,372,318 Size: 5,267 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:119,366,977-119,372,407)mRNA (may differ from genome)Protein (129 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIneXtProtOMIM
PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACBP_HUMAN
DESCRIPTION: RecName: Full=Acyl-CoA-binding protein; Short=ACBP; AltName: Full=Diazepam-binding inhibitor; Short=DBI; AltName: Full=Endozepine; Short=EP;
FUNCTION: Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters. It is also able to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor.
SUBUNIT: Monomer.
SUBCELLULAR LOCATION: Endoplasmic reticulum. Golgi apparatus. Note=Golgi localization is dependent on ligand binding.
TISSUE SPECIFICITY: Isoform 1 is ubiquitous, with a moderate expression level. Isoform 2 is ubiquitous with high level in liver and adipose tissue. Isoform 3 is ubiquitous with strong expression in adipose tissue and heart.
SIMILARITY: Belongs to the ACBP family.
SIMILARITY: Contains 1 ACB (acyl-CoA-binding) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DBI
Diseases sorted by gene-association score: hepatic coma (13), abdominal obesity-metabolic syndrome (9), abdominal obesity-metabolic syndrome 1 (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 156.76 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 3100.72 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.6075-0.261 Picture PostScript Text
3' UTR -16.8089-0.189 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR022408 - Acyl-CoA-binding_prot_CS
IPR000582 - Acyl-CoA-binding_protein
IPR014352 - FERM/acyl-CoA-bd_prot_3-hlx

Pfam Domains:
PF00887 - Acyl CoA binding protein

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2CB8 - X-ray MuPIT 2FJ9 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P07108
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000062 fatty-acyl-CoA binding
GO:0008289 lipid binding
GO:0030156 benzodiazepine receptor binding
GO:0036042 long-chain fatty acyl-CoA binding
GO:0046983 protein dimerization activity

Biological Process:
GO:0006637 acyl-CoA metabolic process
GO:0036151 phosphatidylcholine acyl-chain remodeling
GO:0018345 protein palmitoylation

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005788 endoplasmic reticulum lumen
GO:0005794 Golgi apparatus
GO:0070062 extracellular exosome
GO:0097038 perinuclear endoplasmic reticulum


-  Descriptions from all associated GenBank mRNAs
  LF205326 - JP 2014500723-A/12829: Polycomb-Associated Non-Coding RNAs.
MA440903 - JP 2018138019-A/12829: Polycomb-Associated Non-Coding RNAs.
FM213122 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(2) (DBI gene).
FM213123 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(2)-B(1) (DBI gene).
FM213124 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(2)-B(2) (DBI gene).
FM213125 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(1)-B(1) (DBI gene).
FM213126 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(1)-B(2) (DBI gene).
FM213128 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(1)-G (DBI gene).
FM213132 - Homo sapiens putative regulatory RNA transcript 1A(1)-D(2) (DBI gene).
DL491811 - Novel nucleic acids.
M15887 - Human endozepine (putative ligand of benzodiazepine receptor) mRNA, complete cds.
BC006466 - Homo sapiens diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein), mRNA (cDNA clone IMAGE:3510767).
DL490385 - Novel nucleic acids.
FM213129 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1D(1) (DBI gene).
FM213130 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1D(2) (DBI gene).
FM213131 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1D(1)-B(1) (DBI gene).
BC062996 - Homo sapiens diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein), mRNA (cDNA clone MGC:70414 IMAGE:5168729), complete cds.
FM213127 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1G (DBI gene).
LF319339 - JP 2014500723-A/126842: Polycomb-Associated Non-Coding RNAs.
MA554916 - JP 2018138019-A/126842: Polycomb-Associated Non-Coding RNAs.
M14200 - Human diazepam binding inhibitor (DBI) mRNA, complete cds.
HQ448654 - Synthetic construct Homo sapiens clone IMAGE:100072093; CCSB012108_01 diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) (DBI) gene, encodes complete protein.
KJ891030 - Synthetic construct Homo sapiens clone ccsbBroadEn_00424 DBI gene, encodes complete protein.
GQ891305 - Homo sapiens clone HEL-S-28a epididymis secretory sperm binding protein mRNA, complete cds.
AM000001 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1c (DBI gene).
CR456956 - Homo sapiens full open reading frame cDNA clone RZPDo834A0716D for gene DBI, diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein); complete cds, incl. stopcodon.
DL492217 - Novel nucleic acids.
FZ437621 - JP 2006507841-A/31: Functional and Hyperfunctional siRNA.
LF319337 - JP 2014500723-A/126840: Polycomb-Associated Non-Coding RNAs.
MA554914 - JP 2018138019-A/126840: Polycomb-Associated Non-Coding RNAs.
LF319333 - JP 2014500723-A/126836: Polycomb-Associated Non-Coding RNAs.
MA554910 - JP 2018138019-A/126836: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa03320 - PPAR signaling pathway

Reactome (by CSHL, EBI, and GO)

Protein P07108 (Reactome details) participates in the following event(s):

R-HSA-8848246 DBI, ACBD7 bind MCFA-CoA and LCFA-CoA
R-HSA-77289 Mitochondrial Fatty Acid Beta-Oxidation
R-HSA-8978868 Fatty acid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ACBP_HUMAN, B8ZWD2, B8ZWD6, B8ZWD7, ENST00000627093.1, NM_001178041, P07108, P08869, Q4VWZ6, Q53SQ7, Q6IB48, Q9UCI8, uc010yyk.1, uc010yyk.2, uc010yyk.3, uc010yyk.4
UCSC ID: ENST00000627093.2
RefSeq Accession: NM_001178041
Protein: P07108 (aka ACBP_HUMAN)
CCDS: CCDS54390.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.