Human Gene DHRS9 (ENST00000412271.1) from GENCODE V44
  Description: Homo sapiens dehydrogenase/reductase 9 (DHRS9), transcript variant 4, mRNA. (from RefSeq NM_001142271)
RefSeq Summary (NM_001142271): This gene encodes a member of the short-chain dehydrogenases/reductases (SDR) family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. This protein demonstrates oxidoreductase activity toward hydroxysteroids and is able to convert 3-alpha-tetrahydroprogesterone to dihydroxyprogesterone and 3-alpha-androstanediol to dihydroxyprogesterone in the cytoplasm, and may additionally function as a transcriptional repressor in the nucleus. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
Gencode Transcript: ENST00000412271.1
Gencode Gene: ENSG00000073737.17
Transcript (Including UTRs)
   Position: hg38 chr2:169,081,107-169,096,167 Size: 15,061 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr2:169,081,582-169,095,767 Size: 14,186 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:169,081,107-169,096,167)mRNA (may differ from genome)Protein (319 aa)
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HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DHRS9_HUMAN
DESCRIPTION: RecName: Full=Dehydrogenase/reductase SDR family member 9; EC=1.1.-.-; AltName: Full=3-alpha hydroxysteroid dehydrogenase; Short=3-alpha-HSD; AltName: Full=NADP-dependent retinol dehydrogenase/reductase; AltName: Full=RDH-E2; AltName: Full=RDHL; AltName: Full=Short-chain dehydrogenase/reductase retSDR8; AltName: Full=Tracheobronchial epithelial cell-specific retinol dehydrogenase; Short=RDH-TBE; Flags: Precursor;
FUNCTION: 3-alpha-hydroxysteroid dehydrogenase that converts 3- alpha-tetrahydroprogesterone (allopregnanolone) to dihydroxyprogesterone and 3-alpha-androstanediol to dihydroxyprogesterone. May play a role in the biosynthesis of retinoic acid from retinaldehyde, but seems to have low activity with retinoids. Can utilize both NADH and NADPH.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=9 uM for NADH; KM=72 uM for NAD; KM=5 uM for allopregnanolone; KM=7.5 uM for 3-alpha-androstanediol; KM=24 uM for androsterone; KM=12 uM for dihydrotestosterone;
SUBUNIT: Homotetramer (By similarity).
SUBCELLULAR LOCATION: Microsome membrane. Endoplasmic reticulum membrane (Potential). Note=Associated with microsomal membranes.
TISSUE SPECIFICITY: Highly expressed in trachea and epidermis. Detected at lower levels in spinal cord, bone marrow, brain, tongue, esophagus, heart, colon, testis, placenta, lung, skeletal muscle and lymph node.
SIMILARITY: Belongs to the short-chain dehydrogenases/reductases (SDR) family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.94 RPKM in Colon - Transverse
Total median expression: 54.95 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.80105-0.198 Picture PostScript Text
3' UTR -103.40400-0.259 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002198 - DH_sc/Rdtase_SDR
IPR002347 - Glc/ribitol_DH
IPR016040 - NAD(P)-bd_dom

Pfam Domains:
PF00106 - short chain dehydrogenase

ModBase Predicted Comparative 3D Structure on Q9BPW9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004022 alcohol dehydrogenase (NAD) activity
GO:0004745 retinol dehydrogenase activity
GO:0016491 oxidoreductase activity
GO:0016854 racemase and epimerase activity
GO:0047035 testosterone dehydrogenase (NAD+) activity

Biological Process:
GO:0002138 retinoic acid biosynthetic process
GO:0008209 androgen metabolic process
GO:0030855 epithelial cell differentiation
GO:0042448 progesterone metabolic process
GO:0042572 retinol metabolic process
GO:0042904 9-cis-retinoic acid biosynthetic process
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0016020 membrane
GO:0030176 integral component of endoplasmic reticulum membrane
GO:0031090 organelle membrane
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  AF529286 - Homo sapiens microsomal NADP-dependent retinol dehydrogenase/reductase transcript C mRNA, complete cds.
AY017349 - Homo sapiens retinol dehydrogenase mRNA, complete cds.
AK296625 - Homo sapiens cDNA FLJ55219 complete cds, highly similar to Dehydrogenase/reductase SDR family member 9 precursor (EC 1.1.-.-).
BC051797 - Homo sapiens dehydrogenase/reductase (SDR family) member 9, mRNA (cDNA clone IMAGE:5753393), containing frame-shift errors.
AK313220 - Homo sapiens cDNA, FLJ93721, highly similar to Homo sapiens NADP-dependent retinol dehydrogenase/reductase (RDHL),transcript variant C, mRNA.
AF343729 - Homo sapiens 3-alpha hydroxysteroid dehydrogenase mRNA, complete cds.
AF240697 - Homo sapiens retinol dehydrogenase homolog isoform-2 (RDH) mRNA, complete cds.
AF240698 - Homo sapiens retinol dehydrogenase homolog isoform-1 (RDH) mRNA, complete cds.
BC058883 - Homo sapiens dehydrogenase/reductase (SDR family) member 9, mRNA (cDNA clone MGC:64824 IMAGE:5168747), complete cds.
AF529287 - Homo sapiens microsomal NADP-dependent retinol dehydrogenase/reductase transcript B mRNA, complete cds.
AY359046 - Homo sapiens clone DNA56406 RDHL (UNQ835) mRNA, complete cds.
AF529288 - Homo sapiens microsomal NADP-dependent retinol dehydrogenase/reductase transcript A mRNA, complete cds.
AF067174 - Homo sapiens retinol dehydrogenase homolog mRNA, complete cds.
CU691320 - Synthetic construct Homo sapiens gateway clone IMAGE:100021704 5' read DHRS9 mRNA.
GQ129414 - Synthetic construct Homo sapiens clone HAIB:100068711; DKFZo004G0136 dehydrogenase/reductase (SDR family) member 9 protein (DHRS9) gene, partial cds.
HQ448109 - Synthetic construct Homo sapiens clone IMAGE:100071489; CCSB011958_01 dehydrogenase/reductase (SDR family) member 9 (DHRS9) gene, encodes complete protein.
KJ892944 - Synthetic construct Homo sapiens clone ccsbBroadEn_02338 DHRS9 gene, encodes complete protein.
AF295380 - Homo sapiens short-chain dehydrogenase/reductase RETSDR8 mRNA, complete cds.
GQ129415 - Synthetic construct Homo sapiens clone HAIB:100068614; DKFZo008G0135 dehydrogenase/reductase (SDR family) member 9 protein (DHRS9) gene, complete cds.
BC040380 - Homo sapiens dehydrogenase/reductase (SDR family) member 9, mRNA (cDNA clone IMAGE:4777059), partial cds.
JD458183 - Sequence 439207 from Patent EP1572962.
JD231672 - Sequence 212696 from Patent EP1572962.
JD423467 - Sequence 404491 from Patent EP1572962.
JD501498 - Sequence 482522 from Patent EP1572962.
JD472919 - Sequence 453943 from Patent EP1572962.
JD192933 - Sequence 173957 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00830 - Retinol metabolism
hsa01100 - Metabolic pathways

Reactome (by CSHL, EBI, and GO)

Protein Q9BPW9 (Reactome details) participates in the following event(s):

R-HSA-5362518 RDH10,16,DHRS9,RDHE2 oxidise atROL to atRAL
R-HSA-2454081 RDH5 oxidises 11cROL to 11cRAL
R-HSA-5365859 RA biosynthesis pathway
R-HSA-2453902 The canonical retinoid cycle in rods (twilight vision)
R-HSA-5362517 Signaling by Retinoic Acid
R-HSA-2187338 Visual phototransduction
R-HSA-9006931 Signaling by Nuclear Receptors
R-HSA-418594 G alpha (i) signalling events
R-HSA-162582 Signal Transduction
R-HSA-388396 GPCR downstream signalling
R-HSA-372790 Signaling by GPCR

-  Other Names for This Gene
  Alternate Gene Symbols: D3DPC1, DHRS9_HUMAN, NM_001142271, Q5RKX1, Q9BPW9, Q9NRA9, Q9NRB0, uc010zde.1, uc010zde.2, UNQ835/PRO1773
UCSC ID: ENST00000412271.1
RefSeq Accession: NM_001142271
Protein: Q9BPW9 (aka DHRS9_HUMAN)
CCDS: CCDS2231.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.