Human Gene MAP3K13 (ENST00000446828.5) from GENCODE V44
  Description: Homo sapiens mitogen-activated protein kinase kinase kinase 13 (MAP3K13), transcript variant 3, mRNA. (from RefSeq NM_001242317)
RefSeq Summary (NM_001242317): The protein encoded by this gene is a member of serine/threonine protein kinase family. This kinase contains a dual leucine-zipper motif, and has been shown to form dimers/oligomers through its leucine-zipper motif. This kinase can phosphorylate and activate MAPK8/JNK, MAP2K7/MKK7, which suggests a role in the JNK signaling pathway. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000446828.5
Gencode Gene: ENSG00000073803.14
Transcript (Including UTRs)
   Position: hg38 chr3:185,282,953-185,482,749 Size: 199,797 Total Exon Count: 13 Strand: +
Coding Region
   Position: hg38 chr3:185,285,606-185,482,456 Size: 196,851 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:185,282,953-185,482,749)mRNA (may differ from genome)Protein (759 aa)
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HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: M3K13_HUMAN
DESCRIPTION: RecName: Full=Mitogen-activated protein kinase kinase kinase 13; EC=2.7.11.25; AltName: Full=Leucine zipper-bearing kinase; AltName: Full=Mixed lineage kinase; Short=MLK;
FUNCTION: Activates the JUN N-terminal pathway through activation of the MAP kinase kinase MAP2K7. Acts synergistically with PRDX3 to regulate the activation of NF-kappa-B in the cytosol. This activation is kinase-dependent and involves activating the IKK complex, the IKBKB-containing complex that phosphorylates inhibitors of NF-kappa-B.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium (By similarity).
ENZYME REGULATION: Activated by autophosphorylation and homodimerization.
SUBUNIT: Homodimer; forms dimers through the leucine-zipper motif. Interacts with the C-terminus of MAPK8IP1 through the kinase catalytic domain. Binds PRDX3. Associates with the IKK complex through the kinase domain.
INTERACTION: Self; NbExp=2; IntAct=EBI-1168480, EBI-1168480;
SUBCELLULAR LOCATION: Cytoplasm. Membrane; Peripheral membrane protein.
TISSUE SPECIFICITY: Expressed in the adult brain, liver, placenta and pancreas, with expression strongest in the pancreas.
PTM: Autophosphorylated on serine and threonine residues.
SIMILARITY: Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. MAP kinase kinase kinase subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=AAI11727.1; Type=Erroneous translation; Note=Wrong choice of CDS; Sequence=BAG59505.1; Type=Erroneous termination; Positions=740; Note=Translated as Tyr;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.12 RPKM in Pituitary
Total median expression: 174.29 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -46.20164-0.282 Picture PostScript Text
3' UTR -55.10293-0.188 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR017419 - MAP3K12_MAP3K13
IPR000719 - Prot_kinase_cat_dom
IPR001245 - Ser-Thr/Tyr_kinase_cat_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF07714 - Protein tyrosine kinase

ModBase Predicted Comparative 3D Structure on O43283
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004709 MAP kinase kinase kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019901 protein kinase binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding

Biological Process:
GO:0000186 activation of MAPKK activity
GO:0006468 protein phosphorylation
GO:0007254 JNK cascade
GO:0016310 phosphorylation
GO:0046777 protein autophosphorylation
GO:0051092 positive regulation of NF-kappaB transcription factor activity

Cellular Component:
GO:0005737 cytoplasm
GO:0016020 membrane
GO:0008385 IkappaB kinase complex


-  Descriptions from all associated GenBank mRNAs
  AK297646 - Homo sapiens cDNA FLJ58266 complete cds, highly similar to Mitogen-activated protein kinase kinase kinase 13 (EC 2.7.11.25).
AK312714 - Homo sapiens cDNA, FLJ93116, Homo sapiens mitogen-activated protein kinase kinase kinase 13 (MAP3K13), mRNA.
AK302951 - Homo sapiens cDNA FLJ58309 complete cds, highly similar to Mitogen-activated protein kinase kinasekinase 13 (EC 2.7.11.25).
BC031677 - Homo sapiens mitogen-activated protein kinase kinase kinase 13, mRNA (cDNA clone IMAGE:5167124), complete cds.
AK296961 - Homo sapiens cDNA FLJ56375 complete cds, highly similar to Mitogen-activated protein kinase kinase kinase 13 (EC 2.7.11.25).
AB001872 - Homo sapiens mRNA for leucine zipper bearing kinase, complete cds.
BC111726 - Homo sapiens mitogen-activated protein kinase kinase kinase 13, mRNA (cDNA clone MGC:133196 IMAGE:40028559), complete cds.
KJ901950 - Synthetic construct Homo sapiens clone ccsbBroadEn_11344 MAP3K13 gene, encodes complete protein.
BC036593 - Homo sapiens cDNA clone IMAGE:4815204.
BC015996 - Homo sapiens, clone IMAGE:4294444, mRNA.
Z25428 - H.sapiens protein-serine/threonine kinase gene, complete CDS.
JD469411 - Sequence 450435 from Patent EP1572962.
JD093728 - Sequence 74752 from Patent EP1572962.
JD103417 - Sequence 84441 from Patent EP1572962.
JD324612 - Sequence 305636 from Patent EP1572962.
JD266235 - Sequence 247259 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04010 - MAPK signaling pathway

BioCarta from NCI Cancer Genome Anatomy Project
h_mapkPathway - MAPKinase Signaling Pathway

-  Other Names for This Gene
  Alternate Gene Symbols: B2R6U2, B4DLE3, B4DMV2, B4DZJ4, D3DNU1, ENST00000446828.1, ENST00000446828.2, ENST00000446828.3, ENST00000446828.4, LZK, M3K13_HUMAN, NM_001242317, O43283, Q05BY6, Q15450, Q2NKN3, uc011brt.1, uc011brt.2, uc011brt.3
UCSC ID: ENST00000446828.5
RefSeq Accession: NM_001242317
Protein: O43283 (aka M3K13_HUMAN)
CCDS: CCDS56298.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.