Human Gene FAM83F (ENST00000333407.11) from GENCODE V44
  Description: Homo sapiens family with sequence similarity 83 member F (FAM83F), mRNA. (from RefSeq NM_138435)
Gencode Transcript: ENST00000333407.11
Gencode Gene: ENSG00000133477.17
Transcript (Including UTRs)
   Position: hg38 chr22:39,994,954-40,043,534 Size: 48,581 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr22:39,995,043-40,029,565 Size: 34,523 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Methods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:39,994,954-40,043,534)mRNA (may differ from genome)Protein (500 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMGIneXtProtPubMed
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FA83F_HUMAN
DESCRIPTION: RecName: Full=Protein FAM83F;
SIMILARITY: Belongs to the FAM83 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.05 RPKM in Testis
Total median expression: 58.26 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -62.3089-0.700 Picture PostScript Text
3' UTR -5257.0013969-0.376 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR012461 - DUF1669

Pfam Domains:
PF07894 - Protein of unknown function (DUF1669)

ModBase Predicted Comparative 3D Structure on Q8NEG4
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Descriptions from all associated GenBank mRNAs
  BC031099 - Homo sapiens family with sequence similarity 83, member F, mRNA (cDNA clone MGC:33937 IMAGE:5296483), complete cds.
KJ905596 - Synthetic construct Homo sapiens clone ccsbBroadEn_15222 FAM83F gene, encodes complete protein.
AK311584 - Homo sapiens cDNA, FLJ18626.
BC011204 - Homo sapiens family with sequence similarity 83, member F, mRNA (cDNA clone MGC:17507 IMAGE:3455576), complete cds.
KJ903633 - Synthetic construct Homo sapiens clone ccsbBroadEn_13027 FAM83F gene, encodes complete protein.
JD282674 - Sequence 263698 from Patent EP1572962.
JD274157 - Sequence 255181 from Patent EP1572962.
JD207187 - Sequence 188211 from Patent EP1572962.
JD422787 - Sequence 403811 from Patent EP1572962.
JD443904 - Sequence 424928 from Patent EP1572962.
JD453566 - Sequence 434590 from Patent EP1572962.
JD248137 - Sequence 229161 from Patent EP1572962.
JD156217 - Sequence 137241 from Patent EP1572962.
JD535465 - Sequence 516489 from Patent EP1572962.
JD219622 - Sequence 200646 from Patent EP1572962.
JD219623 - Sequence 200647 from Patent EP1572962.
JD073028 - Sequence 54052 from Patent EP1572962.
JD218968 - Sequence 199992 from Patent EP1572962.
JD474902 - Sequence 455926 from Patent EP1572962.
JD338700 - Sequence 319724 from Patent EP1572962.
JD500258 - Sequence 481282 from Patent EP1572962.
JD366869 - Sequence 347893 from Patent EP1572962.
DQ580828 - Homo sapiens piRNA piR-48940, complete sequence.
DQ588647 - Homo sapiens piRNA piR-55759, complete sequence.
AK126297 - Homo sapiens cDNA FLJ44317 fis, clone TRACH3000586.
JD063866 - Sequence 44890 from Patent EP1572962.
JD066491 - Sequence 47515 from Patent EP1572962.
JD140220 - Sequence 121244 from Patent EP1572962.
JD413178 - Sequence 394202 from Patent EP1572962.
JD479030 - Sequence 460054 from Patent EP1572962.
DQ576673 - Homo sapiens piRNA piR-44785, complete sequence.
DQ591043 - Homo sapiens piRNA piR-58155, complete sequence.
DQ585376 - Homo sapiens piRNA piR-52488, complete sequence.
DQ578372 - Homo sapiens piRNA piR-46484, complete sequence.
DQ579139 - Homo sapiens piRNA piR-47251, complete sequence.
JD455495 - Sequence 436519 from Patent EP1572962.
JD342347 - Sequence 323371 from Patent EP1572962.
JD480534 - Sequence 461558 from Patent EP1572962.
JD466770 - Sequence 447794 from Patent EP1572962.
JD562196 - Sequence 543220 from Patent EP1572962.
JD550368 - Sequence 531392 from Patent EP1572962.
JD234225 - Sequence 215249 from Patent EP1572962.
JD293526 - Sequence 274550 from Patent EP1572962.
JD293527 - Sequence 274551 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000333407.1, ENST00000333407.10, ENST00000333407.2, ENST00000333407.3, ENST00000333407.4, ENST00000333407.5, ENST00000333407.6, ENST00000333407.7, ENST00000333407.8, ENST00000333407.9, FA83F_HUMAN, NM_138435, Q8NEG4, Q96FD6, uc021wqa.1, uc021wqa.2, uc021wqa.3
UCSC ID: ENST00000333407.11
RefSeq Accession: NM_138435
Protein: Q8NEG4 (aka FA83F_HUMAN)
CCDS: CCDS14000.2

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.