Human Gene SMIM17 (uc031rnd.1) Description and Page Index
  Description: Homo sapiens small integral membrane protein 17 (SMIM17), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr19:57,154,527-57,168,614 Size: 14,088 Total Exon Count: 5 Strand: +


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:57,154,527-57,168,614)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblEntrez GeneExonPrimerH-INVHGNCLynx
PubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.04 RPKM in Brain - Hypothalamus
Total median expression: 44.64 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK095199 - Homo sapiens cDNA FLJ37880 fis, clone BRSTN2000220.
JD405361 - Sequence 386385 from Patent EP1572962.
JD048371 - Sequence 29395 from Patent EP1572962.
JD068585 - Sequence 49609 from Patent EP1572962.
JD440131 - Sequence 421155 from Patent EP1572962.
JD255900 - Sequence 236924 from Patent EP1572962.
JD135125 - Sequence 116149 from Patent EP1572962.
JD338926 - Sequence 319950 from Patent EP1572962.
JD553986 - Sequence 535010 from Patent EP1572962.
JD566993 - Sequence 548017 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK095199, NM_001193628, uc021vch.1
UCSC ID: uc031rnd.1
RefSeq Accession: NM_001193628

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AK095199.1
exon count: 5CDS single in 3' UTR: no RNA size: 1796
ORF size: 0CDS single in intron: no Alignment % ID: 99.78
txCdsPredict score: 514.00frame shift in genome: no % Coverage: 99.61
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.